Gene
| Gene Model ID | pfu_aug1.0_1298.1_29660 |
|---|---|
| Locus | scaffold1298.1 : 1136 ... 10094 : + |
| To GenomeBrowser | scaffold1298.1:1136..10094 |
| Genes list of scaffold | scaffold1298.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1298.1_29660.t1 | 3 | 1 | Ldl_recept_b | 23 | 42 | 1.1e-09 | 38.4 | 0.29 | 4400.0 | -1.9 |
| pfu_aug1.0_1298.1_29660.t1 | 3 | 2 | Ldl_recept_b | 88 | 98 | 1.1e-09 | 38.4 | 0.0069 | 100.0 | 3.3 |
| pfu_aug1.0_1298.1_29660.t1 | 3 | 3 | Ldl_recept_b | 101 | 141 | 1.1e-09 | 38.4 | 1.7e-12 | 2.5e-08 | 34.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1298.1_29660.t1 | gi|313236084|emb|CBY11409.1| | unnamed protein product [Oikopleura dioica] | 5.0e-13 |
Transcript
| Transcript ID | pfu_aug1.0_1298.1_29660.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1298.1_29660.t1 atgattatgatacatgacaatgatgtaatattctttttatcagatgtttacttctcaacatcaacaaagataaagaaacg gaatacaaatactggaaatgaagtggacattgtatccaagtctgacagtcggttccttggtttggcggcacatttggggg actctaagctgtactatgttgatgtggccgacgccaccctggggatatacagaaagaatttagacggcacaggagcggag gaaaggattgttcaatacccccatatgagcccagtgggccttgctgtagattgggtgtttaaccatctgtattggacaga ccctgtgtatcaggcagtaatgatgtctaaccttgatggatcaggtcgtgttgccttggtaacaaaaggactaagcatac ctagaggaatcgctgtggatccaaaaaacatgtatgtggttatttag |
|
Protein
| Protein ID | pfu_aug1.0_1298.1_29660.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1298.1_29660.t1 MIMIHDNDVIFFLSDVYFSTSTKIKKRNTNTGNEVDIVSKSDSRFLGLAAHLGDSKLYYVDVADATLGIYRKNLDGTGAE ERIVQYPHMSPVGLAVDWVFNHLYWTDPVYQAVMMSNLDGSGRVALVTKGLSIPRGIAVDPKNMYVVI |
|