Gene
| Gene Model ID | pfu_aug1.0_13008.1_68585 |
|---|---|
| Locus | scaffold13008.1 : 44586 ... 47251 : + |
| To GenomeBrowser | scaffold13008.1:44586..47251 |
| Genes list of scaffold | scaffold13008.1 |
| Synonym | pfu_aug2.0_1190.1_01460 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_13008.1_68585.t1 | 1 | 1 | Tektin | 16 | 286 | 0.0 | 308.5 | 0.0 | 0.0 | 308.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_13008.1_68585.t1 | gi|260793583|ref|XP_002591791.1| | hypothetical protein BRAFLDRAFT_123537 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_13008.1_68585.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13008.1_68585.t1 atggcaactcagctacgtcccataactcgtcaccagcctccagactggttcacaagtaactacacaatctccactaatgc tgagcgtcagaggagtgcttcacaccaggtcagacaagaaagcagattcctcagaaacgagacagataaccagacaaaat gggatcagcactcaaacaatgttcgtctcgctgaccgtgtagacaacatcaggcagtggaaagaaattcttgaaaagact cttgctgatattgataaagaaatagcagatttgtcagatgctaaagaactgacagagcaggctctagaggccaagaatct acctacagatgttgccattgaatgtttgaccttaagggaaggcagacagagtattgatgttgttcaagatgaagcagaaa atcagttacataaggaagttgaagtaattgatggaatcaaaaaagctcttcaacaaaaaatcagtgatgcgtttgagcag ctgtgccttctccaagaagctcgccaacaactgcaagcagacttacaagataaaaacatagccctaggtatagatgtaga tcagtataacctcaccgatagatcaccaaatataagcttcaaacctgatcctctacgtgttccaaaagggagcaccacac cacagcagtgggaagatttcagccggtataacaaggaacgtgcggaggcagagatgaagtcctctacacgactccgtgag gccatccatcatacgttacagcaatgtgataatgatttagaggcccagagactcgcaacagagtacgcctacaggaagag aatccatgagtttgagagggccaaggatgaactggagtggcagaagaagaatgtatgtgaagttcataacttgaatccaa aggggtag |
|
Protein
| Protein ID | pfu_aug1.0_13008.1_68585.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13008.1_68585.t1 MATQLRPITRHQPPDWFTSNYTISTNAERQRSASHQVRQESRFLRNETDNQTKWDQHSNNVRLADRVDNIRQWKEILEKT LADIDKEIADLSDAKELTEQALEAKNLPTDVAIECLTLREGRQSIDVVQDEAENQLHKEVEVIDGIKKALQQKISDAFEQ LCLLQEARQQLQADLQDKNIALGIDVDQYNLTDRSPNISFKPDPLRVPKGSTTPQQWEDFSRYNKERAEAEMKSSTRLRE AIHHTLQQCDNDLEAQRLATEYAYRKRIHEFERAKDELEWQKKNVCEVHNLNPKG |
|