Gene
| Gene Model ID | pfu_aug1.0_13020.1_03301 |
|---|---|
| Locus | scaffold13020.1 : 16995 ... 41195 : - |
| To GenomeBrowser | scaffold13020.1:16995..41195 |
| Genes list of scaffold | scaffold13020.1 |
| Synonym | pfu_aug2.0_3502.1_09160 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_13020.1_03301.t1 | 1 | 1 | RNA_pol_Rpb2_1 | 41 | 80 | 1.5e-06 | 27.3 | 3.6e-10 | 1.8e-06 | 27.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_13020.1_03301.t1 | gi|260807868|ref|XP_002598730.1| | hypothetical protein BRAFLDRAFT_282817 [Branchiostoma floridae] | 2.0e-23 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_13020.1_03301.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13020.1_03301.t1 atgcgggagtctcccgcaaaatgcgggagaattgacagacattgtgtcagcatgcatgaacgcatggctgactccacaca ggacaaatggaaattgctgccagctttcctaaaggttaagggtttggtgaagcagcacattgactcttttaactacttca ttaatgttgagatcaaaagtatcatgaaagccaatgagaagatcctcagtgatgcagatccaaacttttacatgaaagta tgtggacttattgtaccacaagaagatatgccatttacagacttggccattaagttttcaatgtggcaggaattttcttt ctaccagtacaatttttgtgtcgcctgcaaagcatag |
|
Protein
| Protein ID | pfu_aug1.0_13020.1_03301.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13020.1_03301.t1 MRESPAKCGRIDRHCVSMHERMADSTQDKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKSIMKANEKILSDADPNFYMKV CGLIVPQEDMPFTDLAIKFSMWQEFSFYQYNFCVACKA |
|