Gene
| Gene Model ID | pfu_aug1.0_13039.1_61141 |
|---|---|
| Locus | scaffold13039.1 : 1328 ... 9915 : - |
| To GenomeBrowser | scaffold13039.1:1328..9915 |
| Genes list of scaffold | scaffold13039.1 |
| Synonym | pfu_aug2.0_580.1_00911 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_13039.1_61141.t1 | 2 | 1 | RVT_1 | 13 | 127 | 1.5e-06 | 27.7 | 1.4e-09 | 1.0e-05 | 24.9 |
| pfu_aug1.0_13039.1_61141.t1 | 2 | 2 | RVT_1 | 297 | 320 | 1.5e-06 | 27.7 | 0.2 | 1500.0 | -1.7 |
| pfu_aug1.0_13039.1_61141.t1 | 1 | 1 | rve | 546 | 649 | 1.6e-12 | 47.5 | 5.5e-16 | 4.1e-12 | 46.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_13039.1_61141.t1 | gi|221120780|ref|XP_002167062.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_13039.1_61141.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13039.1_61141.t1 atgcaggcccgactcgtacctccgaacaagaaaaaatcggtcctcgatgcctggaacggatatcatagtgtaccgataca ccccgatgatcgtcatttcacaacatttatcactccatggggtagataccgatacaaaaccgctcgtcagggatatattg catctggagatggatatactcgacgctatgatgcaattgtcgccggtataccagacaagactaaatgtattgacgacgtc cttctgtggtcgaattccatcgaggatatcttctttcaagtcgctcaatggctcaacgcatgtggtcgaaatggcataac tctcaacccggacaaatttgactttgcacaggatcacgttgagttcgcaggcttcgaaataacagaagatagtgttcgac catgctctaaattcattaaagccatcgccgattttccgacaccgaagaccataactgatatacgctcatggtttggactt gtcaatcaggtctcgtatgcgttcagtatggctgacaaaatgctacccttcagagagctccttaaaccgaacaagaaatt cacatgggacgatgagctggatcttctgtttaatgaatctaaagacgtgatcatcagagagatagacgaaggcgtcagaa tatttgacaaaagcaaaccaacatgcctggcaaccgactggtcaaagacaggcattgggttctggctcttccaaaaacac tgttcttgtactagacaagaacccttttgctgcagaacaggctggaaaatcacattggtgggaagcagattcaccaatgc cgcagaatctcgatatgccccgatcgaaggggaggccttagccgttgcagacgctctagacaaggcgagatatttcgtgt tgggatgcgacaacctgttcgtagctgtagatcacaaaccgctcttgaaaatcttgggtgaaatatcacttgaagaatta ccaaactcaagattaagaaatctgaaagaaaaaactctgcgatatcgctttcgcgtaatccacatacctggtataaaaca ccgtgcagctgattgcgtctctcgacatccgactggtgatccagagttgctatgcttactggacgactcgcaatctacaa ttgagtcaacgtacacgcctaactcgttcgatattattcgctgctaccaggattcagacgacatagacaccgtcttgatt gcttctgctgcctgttccctcggatcattatccattaaatccgttacttgggacagggtcagacttgaaacagcaagtga caataacatgcaccttctcctgcaactcatcaaatccggattgcctaactctcgaaatcaatatccatctcctttgcgcg aatactttaaacaccgagaccatctccacaccatcgacggtgtagtcatgtacaaggaccgcatagtgataccacctaca cttcgaaatgaggttctctcagccttgcattctgctcaccagggtgtcactactatgacctcgcgcgctgagagttcagt tttctggcccggcatatcacccgttattatagagacaagagcacaatgcaatcactgtaatcgcattgctccctccaatc cgaatgccccgccagcacccctgataccgcctaactaccccttccaatgcatatgtgccgatttcttccatcacaggggt atttattacttggtcatcgtagacagatattcgaattggccaataatcgagaagtctaatggagcaactggactaataga ctgtttgcgtcgaacatttgtcacattcggtatcccaacagaactagcatccgatggtggacccgaattcaccgccttaa ctattcggcaatttctcaaagattggggtgttcatcatcgtctttcctcggttgccttccctcacaacaactgtcgcgct gaagttggagtcaaaaccgtcaaacgcctaatcgctgacaataccaattctcatggcaatctgaacactgactctttgca aaaagctatgctccaatacaggaacacacctgatcgggacacaaaactttccccggccatgcatgtgttcggacttcata cctatacctcccgggaagtataa |
|
Protein
| Protein ID | pfu_aug1.0_13039.1_61141.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13039.1_61141.t1 MQARLVPPNKKKSVLDAWNGYHSVPIHPDDRHFTTFITPWGRYRYKTARQGYIASGDGYTRRYDAIVAGIPDKTKCIDDV LLWSNSIEDIFFQVAQWLNACGRNGITLNPDKFDFAQDHVEFAGFEITEDSVRPCSKFIKAIADFPTPKTITDIRSWFGL VNQVSYAFSMADKMLPFRELLKPNKKFTWDDELDLLFNESKDVIIREIDEGVRIFDKSKPTCLATDWSKTGIGFWLFQKH CSCTRQEPFCCRTGWKITLVGSRFTNAAESRYAPIEGEALAVADALDKARYFVLGCDNLFVAVDHKPLLKILGEISLEEL PNSRLRNLKEKTLRYRFRVIHIPGIKHRAADCVSRHPTGDPELLCLLDDSQSTIESTYTPNSFDIIRCYQDSDDIDTVLI ASAACSLGSLSIKSVTWDRVRLETASDNNMHLLLQLIKSGLPNSRNQYPSPLREYFKHRDHLHTIDGVVMYKDRIVIPPT LRNEVLSALHSAHQGVTTMTSRAESSVFWPGISPVIIETRAQCNHCNRIAPSNPNAPPAPLIPPNYPFQCICADFFHHRG IYYLVIVDRYSNWPIIEKSNGATGLIDCLRRTFVTFGIPTELASDGGPEFTALTIRQFLKDWGVHHRLSSVAFPHNNCRA EVGVKTVKRLIADNTNSHGNLNTDSLQKAMLQYRNTPDRDTKLSPAMHVFGLHTYTSREV |
|