Gene
| Gene Model ID | pfu_aug1.0_1306.1_22531 |
|---|---|
| Locus | scaffold1306.1 : 32416 ... 40533 : + |
| To GenomeBrowser | scaffold1306.1:32416..40533 |
| Genes list of scaffold | scaffold1306.1 |
| Synonym | pfu_aug2.0_108.1_26856 |
Manual annotation
| Study field | other |
|---|---|
| Gene name | caldumolin like |
| Description | Blast best hit to AF085250(Perca flavescens) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1306.1_22531.t1 | 2 | 1 | EF-hand_4 | 14 | 79 | 3.7e-10 | 39.4 | 7.7e-06 | 0.006 | 16.3 |
| pfu_aug1.0_1306.1_22531.t1 | 4 | 1 | EF-hand_1 | 18 | 46 | 3.80004e-41 | 135.2 | 9.3e-12 | 7.3e-09 | 34.3 |
| pfu_aug1.0_1306.1_22531.t1 | 4 | 1 | EF-hand_6 | 18 | 47 | 1.9e-30 | 101.9 | 3.6e-12 | 2.8e-09 | 36.0 |
| pfu_aug1.0_1306.1_22531.t1 | 4 | 1 | EF-hand_8 | 19 | 38 | 1.7e-32 | 110.7 | 0.00047 | 0.37 | 10.4 |
| pfu_aug1.0_1306.1_22531.t1 | 2 | 1 | EF-hand_7 | 20 | 79 | 8.7e-37 | 125.0 | 2.3e-17 | 1.8e-14 | 53.6 |
| pfu_aug1.0_1306.1_22531.t1 | 4 | 1 | EF-hand_5 | 20 | 39 | 9.6e-27 | 91.1 | 6.9e-09 | 5.4e-06 | 25.5 |
| pfu_aug1.0_1306.1_22531.t1 | 2 | 1 | EF-hand_9 | 22 | 81 | 1.8e-14 | 53.3 | 4.1e-11 | 3.2e-08 | 33.3 |
| pfu_aug1.0_1306.1_22531.t1 | 2 | 1 | SPARC_Ca_bdg | 22 | 76 | 4.1e-08 | 33.2 | 2.1e-05 | 0.016 | 15.1 |
| pfu_aug1.0_1306.1_22531.t1 | 3 | 1 | UPF0154 | 34 | 63 | 4.5e-06 | 26.1 | 0.00042 | 0.33 | 10.6 |
| pfu_aug1.0_1306.1_22531.t1 | 4 | 2 | EF-hand_8 | 38 | 81 | 1.7e-32 | 110.7 | 2.0e-13 | 1.5e-10 | 40.4 |
| pfu_aug1.0_1306.1_22531.t1 | 4 | 2 | EF-hand_1 | 54 | 81 | 3.80004e-41 | 135.2 | 2.2e-12 | 1.7e-09 | 36.2 |
| pfu_aug1.0_1306.1_22531.t1 | 4 | 2 | EF-hand_6 | 55 | 80 | 1.9e-30 | 101.9 | 8.6e-07 | 0.00067 | 19.3 |
| pfu_aug1.0_1306.1_22531.t1 | 4 | 2 | EF-hand_5 | 55 | 76 | 9.6e-27 | 91.1 | 6.7e-08 | 5.3e-05 | 22.3 |
| pfu_aug1.0_1306.1_22531.t1 | 3 | 2 | UPF0154 | 73 | 98 | 4.5e-06 | 26.1 | 0.54 | 420.0 | 0.6 |
| pfu_aug1.0_1306.1_22531.t1 | 4 | 3 | EF-hand_8 | 88 | 108 | 1.7e-32 | 110.7 | 3.1e-05 | 0.024 | 14.2 |
| pfu_aug1.0_1306.1_22531.t1 | 2 | 2 | SPARC_Ca_bdg | 88 | 149 | 4.1e-08 | 33.2 | 7.9e-06 | 0.0062 | 16.5 |
| pfu_aug1.0_1306.1_22531.t1 | 4 | 3 | EF-hand_1 | 91 | 119 | 3.80004e-41 | 135.2 | 6.1e-13 | 4.8e-10 | 38.0 |
| pfu_aug1.0_1306.1_22531.t1 | 4 | 3 | EF-hand_6 | 91 | 120 | 1.9e-30 | 101.9 | 1.9e-12 | 1.5e-09 | 36.9 |
| pfu_aug1.0_1306.1_22531.t1 | 2 | 2 | EF-hand_7 | 92 | 152 | 8.7e-37 | 125.0 | 7.6e-24 | 5.9e-21 | 74.3 |
| pfu_aug1.0_1306.1_22531.t1 | 4 | 3 | EF-hand_5 | 92 | 116 | 9.6e-27 | 91.1 | 2.7e-10 | 2.1e-07 | 29.9 |
| pfu_aug1.0_1306.1_22531.t1 | 2 | 2 | EF-hand_9 | 95 | 153 | 1.8e-14 | 53.3 | 1.9e-06 | 0.0015 | 18.4 |
| pfu_aug1.0_1306.1_22531.t1 | 2 | 2 | EF-hand_4 | 97 | 152 | 3.7e-10 | 39.4 | 2.5e-07 | 0.0002 | 21.0 |
| pfu_aug1.0_1306.1_22531.t1 | 4 | 4 | EF-hand_8 | 104 | 153 | 1.7e-32 | 110.7 | 6.1e-20 | 4.7e-17 | 61.3 |
| pfu_aug1.0_1306.1_22531.t1 | 3 | 3 | UPF0154 | 107 | 135 | 4.5e-06 | 26.1 | 0.00031 | 0.24 | 11.0 |
| pfu_aug1.0_1306.1_22531.t1 | 4 | 4 | EF-hand_1 | 127 | 154 | 3.80004e-41 | 135.2 | 5.0e-12 | 3.9e-09 | 35.1 |
| pfu_aug1.0_1306.1_22531.t1 | 4 | 4 | EF-hand_5 | 131 | 152 | 9.6e-27 | 91.1 | 2.0e-06 | 0.0016 | 17.7 |
| pfu_aug1.0_1306.1_22531.t1 | 4 | 4 | EF-hand_6 | 133 | 153 | 1.9e-30 | 101.9 | 0.00014 | 0.11 | 12.4 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 2 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1306.1_22531.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1306.1_22531.t1 atgctttggaactcggagcaggtgatcacactgacagatgaacaaatcgcagagtttaaggaggcgttttcattatttga taaagatggagacgggacgatcacaaccagtgaactcgggatcgtaatgagatcactgggacagaacccaacagaggcgg agctacaagacatgatcaatgaggtggacgctgatggtaatggaacaatcgatttcgaggagtttctattgatgatggct cgaaaaatgaaggatacggacagtgaagaggaattacgagaagctttccgagtgttcgataaagacggaaatggatttat aagtgctgctgaactcagacatgtcatgacaaatttgggagaaaaattaacagatgaagaagtagatgagatgatcaaag aagctgatttagatggggacggaatggtcaattatgaagagtttgtcaccatgatgaccgccaaatga |
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Protein
| Protein ID | pfu_aug1.0_1306.1_22531.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1306.1_22531.t1 MLWNSEQVITLTDEQIAEFKEAFSLFDKDGDGTITTSELGIVMRSLGQNPTEAELQDMINEVDADGNGTIDFEEFLLMMA RKMKDTDSEEELREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIKEADLDGDGMVNYEEFVTMMTAK |
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