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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_13079.1_61151
Locus scaffold13079.1 : 4596 ... 10855 : -
To GenomeBrowser scaffold13079.1:4596..10855
Genes list of scaffold scaffold13079.1
Synonym NA

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_13079.1_61151.t1 1 1 FAA_hydrolase 14 99 1.2e-24 86.9 9.2e-29 1.4e-24 86.8

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_13079.1_61151.t1 gi|340369575|ref|XP_003383323.1| 3.0e-32

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues
adductorMuscle 1
maleGonad 1

Transcript
Transcript IDpfu_aug1.0_13079.1_61151.t1
Definition-
>pfu_aug1.0_13079.1_61151.t1
atgatctccagtacccggcagaaactacgcaacaaaacagatcctcacaacctaggcctgcggtgtagagtgaacggtgt
cacaaagcaagacagtagtaccaaccagcttatacataagtcagcggcttgtgttgcatttgtcagcaggtttatgaccc
tgaagccaggagacctcatactaacaggtactccaccaggtgtaggagttttcaggaagcctccagagtatctcaagaaa
ggggacgtagtggaatgtgaaatcgatgaaatcggcaaagtagtcaacaaggtggtatga

Protein
Protein IDpfu_aug1.0_13079.1_61151.t1
Definition-
>pfu_aug1.0_13079.1_61151.t1
MISSTRQKLRNKTDPHNLGLRCRVNGVTKQDSSTNQLIHKSAACVAFVSRFMTLKPGDLILTGTPPGVGVFRKPPEYLKK
GDVVECEIDEIGKVVNKVV

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