Gene
| Gene Model ID | pfu_aug1.0_13100.1_39443 |
|---|---|
| Locus | scaffold13100.1 : 32396 ... 38346 : + |
| To GenomeBrowser | scaffold13100.1:32396..38346 |
| Genes list of scaffold | scaffold13100.1 |
| Synonym | pfu_aug2.0_2819.1_32317 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | Msx |
| Description | High BLAST hits to various organisms' MSX. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_13100.1_39443.t1 | 1 | 1 | Homeobox | 183 | 239 | 2.8e-22 | 78.0 | 6.4e-26 | 4.8e-22 | 77.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_13100.1_39443.t1 | gi|158936908|dbj|BAF91569.1| | Msx protein [Corbicula fluminea] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_13100.1_39443.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13100.1_39443.t1 atgcacccggtagctctaacagcgagttctaactctgcatttagcaaactgagtccgtcacacgtgagtacggaaaatgt aaacaatgaaaattctcaagaaaaaacgaccaacaattcaacgttatccggatccaagtctttgtcaccgactccgaaac aggttttgaaatttagtgttgattctatgttatcagaaaagtgctcatcgaaagaggaaaaagacagagaaagttcgaac tctccaaattcggttagttcagacgacagttttcatggatctccaaagacaatttctgctactatgggatcattcagtat ggacggtatacttagtaagcatcacacaaacagtagaactacagacttacaaagttctgtgacacctcctataatgtcac atgtaggaggggagagatggaacggtttttatgctgccacctcatttccatggctgtccaactcctctctaactccccca aaagcaccaccaagtcctcccaggataaatccccagaaatgtacattacggaaacacaaaacgaatcgtaaaccacggac gccattcacaacgtcacaactcttggcgttagaacgaaaattccgtcagaagcagtatctatctatagcggagcgtgcag aattttccgcttcattgaatcttacagagactcaagtcaagatttggtttcaaaatcggagagcaaaggcaaaacgctta catgaagcagaactggaaaaactaaaaatggcggcaaaaccgatgttaccacctgcgatcggtgtgacttttcccgccgc tgctgcattgtactcgggatcatacggaaggcctcatggttttcccagttctctaatatcaccattcagttatgccctga cgccgagttccgtaggtatgacgtatcaccattag |
|
Protein
| Protein ID | pfu_aug1.0_13100.1_39443.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13100.1_39443.t1 MHPVALTASSNSAFSKLSPSHVSTENVNNENSQEKTTNNSTLSGSKSLSPTPKQVLKFSVDSMLSEKCSSKEEKDRESSN SPNSVSSDDSFHGSPKTISATMGSFSMDGILSKHHTNSRTTDLQSSVTPPIMSHVGGERWNGFYAATSFPWLSNSSLTPP KAPPSPPRINPQKCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSASLNLTETQVKIWFQNRRAKAKRL HEAELEKLKMAAKPMLPPAIGVTFPAAAALYSGSYGRPHGFPSSLISPFSYALTPSSVGMTYHH |
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