Gene
| Gene Model ID | pfu_aug1.0_131314.1_06523 |
|---|---|
| Locus | scaffold131314.1 : 1 ... 1080 : - |
| To GenomeBrowser | scaffold131314.1:1..1080 |
| Genes list of scaffold | scaffold131314.1 |
| Synonym | pfu_aug2.0_819.1_31191 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_131314.1_06523.t1 | 1 | 1 | SYF2 | 1 | 100 | 9.5e-26 | 90.7 | 2.1e-29 | 1.0e-25 | 90.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_131314.1_06523.t1 | gi|72078047|ref|XP_788894.1| | PREDICTED: pre-mRNA-splicing factor SYF2 isoform X1 [Strongylocentrotus purpuratus] | 3.0e-27 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_131314.1_06523.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_131314.1_06523.t1 ctgaggataagggtgaggattatgatcgtgtgaagttactggaggtaggagccgatgaagcggaaagatgggagaagaaa aagaagaagaaaaatgcagatcctggattctcagattacgaatcagccactcaacgtcagtatcagagattgaccaaaca gatgaaaccagatcatgataattataaacgacaaagagataaaatgggagatgacttttatgctacaggccacacccttg gattatcacagcacaaagataccccagaggctgtagacaagatggtacaagacttggaaaaaca |
|
Protein
| Protein ID | pfu_aug1.0_131314.1_06523.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_131314.1_06523.t1 EDKGEDYDRVKLLEVGADEAERWEKKKKKKNADPGFSDYESATQRQYQRLTKQMKPDHDNYKRQRDKMGDDFYATGHTLG LSQHKDTPEAVDKMVQDLEK |
|