Gene
| Gene Model ID | pfu_aug1.0_1316.1_51272 |
|---|---|
| Locus | scaffold1316.1 : 29536 ... 31156 : + |
| To GenomeBrowser | scaffold1316.1:29536..31156 |
| Genes list of scaffold | scaffold1316.1 |
| Synonym | pfu_aug2.0_383.1_10696 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1316.1_51272.t1 | 1 | 1 | Neur_chan_LBD | 2 | 126 | 8.2e-15 | 54.5 | 3.2e-18 | 1.2e-14 | 54.0 |
| pfu_aug1.0_1316.1_51272.t1 | 2 | 1 | Neur_chan_memb | 135 | 231 | 2.0e-14 | 54.0 | 2.5e-16 | 9.1e-13 | 48.6 |
| pfu_aug1.0_1316.1_51272.t1 | 2 | 2 | Neur_chan_memb | 260 | 311 | 2.0e-14 | 54.0 | 9.9e-05 | 0.37 | 10.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1316.1_51272.t1 | gi|156379712|ref|XP_001631600.1| | predicted protein [Nematostella vectensis] | 1.0e-24 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 3 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_1316.1_51272.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1316.1_51272.t1 atggagatggacgttacaaagatatggaaaccagcgttaaaattaatgtccccgagtcaagaaagagatcgacttggtaa agaatttgaccttgctgttgtttactcacatggaatggttaccatgacagtccatgatatattcttcacatcttgtgcgg ttcaaattacatattttccatttgatacacaactttgtgacatgtggttcgcatttccggaatatggtaaacttcttact tacatccccaattcaccagttatggacacatcttttttcttcgagaatcctatttggaaggtaaaagagacaaaagttaa atctgtcgataccggatacaactataaccttgtatgtgaaatactactagaaagacgtgctacattttatgccctaaatc ttttgacacctatcttgatactgatggttttgaacagcatggtctttgcacttccggcggagagtggagaacgcgtaggg ttttccgttaccttactcctttccgtagctgtttacatgactattatatcggacaagcttccgaattcctctaaaccttc tcccattctgacgtacgtcctggtcgcctatctagcacagtcagcttttatttgcatcaagaccatacttagtttgagga tgcattcacatagcgaggaagattctgtgtcaccaatgttagccagagttgttcgcgttttaagatgttgttggtgttct tgctgctcgaagaaagacagcgaaagtggcaaaaagtatgaaattgctgtcatttcgaacgaaaatggatttggacatga aagtaaggatgaaaacatcgtcaatcacacaacacaaaatgaaattacatggaggaaagtggcttctacctttgacatca tctttcttatttcaaatatattactttgtgtcattatagctgtggtttatttctgtctcgttttaatgcgaccttggtaa |
|
Protein
| Protein ID | pfu_aug1.0_1316.1_51272.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1316.1_51272.t1 MEMDVTKIWKPALKLMSPSQERDRLGKEFDLAVVYSHGMVTMTVHDIFFTSCAVQITYFPFDTQLCDMWFAFPEYGKLLT YIPNSPVMDTSFFFENPIWKVKETKVKSVDTGYNYNLVCEILLERRATFYALNLLTPILILMVLNSMVFALPAESGERVG FSVTLLLSVAVYMTIISDKLPNSSKPSPILTYVLVAYLAQSAFICIKTILSLRMHSHSEEDSVSPMLARVVRVLRCCWCS CCSKKDSESGKKYEIAVISNENGFGHESKDENIVNHTTQNEITWRKVASTFDIIFLISNILLCVIIAVVYFCLVLMRPW |
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