Gene
| Gene Model ID | pfu_aug1.0_1316.1_51278 |
|---|---|
| Locus | scaffold1316.1 : 92046 ... 112630 : + |
| To GenomeBrowser | scaffold1316.1:92046..112630 |
| Genes list of scaffold | scaffold1316.1 |
| Synonym | pfu_aug2.0_383.1_10702 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1316.1_51278.t1 | 1 | 1 | Helicase_C | 501 | 560 | 1.7e-08 | 34.1 | 9.7e-12 | 3.6e-08 | 33.1 |
| pfu_aug1.0_1316.1_51278.t1 | 1 | 1 | HA2 | 568 | 656 | 3.3e-17 | 62.3 | 3.7e-20 | 1.4e-16 | 60.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1316.1_51278.t1 | gi|351714362|gb|EHB17281.1| | ATP-dependent RNA helicase DHX29, partial [Heterocephalus glaber] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 7 |
| egg-4cell | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| mantlePallium | 4 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1316.1_51278.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1316.1_51278.t1 atgacgactatttctgtgcccctggatttagaacaagatttaattgaattgatacaagcagagcacacagagagaacaaa atgcaaagatctgtcaaagcgtatcactgtcaaaaaactaacagacatgtacaccagcctgtcgcaggcgggattctctc agtctcagatagagacatgtatgaacaacacggtgatgtatggaggtgatcttatagacgccttggattggttctgcctt aatctacctaatgagaaactgccatctggattttccactgcccttgaaaaagaagaagagaagattagacccaaatttga tgcacaactccagcaaaatgttaacctaccagccccatctgtaaaacttacagaaatcaaagctaaagaaacagagaaaa aagctccggaaaagggtaatcaaagattacatagctcgcctatacaggtttttgtcagtaaccaggttaaagtttttgaa aattcaagagatatagcccaggttaaagttttgtctacggacgacgacaacgacgacgacgccgagggtatatcattagc tcttcggacttttttgtcccggcgagctaaaaatgtggtaaacatgaaggactggatcatgcagtatgctgaagtagaat ctgatgaagatgatgacgatgaattaaaagatgtcacaaacaaagaagaaaatgatcctaatgagcagtacctagagttt acggccaagttgttagatgccaaagcagctgcttcacaagccaagtcacacggaaacaaagacaaacagaaggaattgtc taagattatcagggaacttatacaaagaatggacacacttgagaaacatccaaagtttaatcctcaagtgaaaatcaatg acattgacagtgaaaaatcagataaagttcctacacctgtggacgaaattagtgattctatacttcctgatagctttgca gaggaaagtgcctcagatattgcacagggtgtgtctgttaccatggagatggagtcacatgatcaggaggaggaagatga tgaatgttcaggatttgctttatttgaacagatggcatctgtaccagaaccagaggaaaagaaaccaaagagatctgatt ttgatgtgaggaattttgagtacactcgtcagcagtggacggggaagtctcccaagcagttcctgatagattggtgtcgt aaacataagtgtgaagcacctaagtatgagaaagtacatgtcatgggaaacttatggaggtcaaaaactgtctggatgga atggcaagatgccgaaaaggcagcagctaagaaagaaaaagtggaggagaacaagccgagggatcagtacattaccaggt taatgaagaagcttcagatcagtgaaaaacaatcaaactcagacagtagatgtgacgacgatggcactctggaatcatgg gaagactttgaagaagaggacttgttagtgtacatagataaggattccgagttcagtgacatggaggggtatcagattct ggccctacattctgtgctgtcttcctctgaccaatcagctgcctttgttactcctccaccaggtgtcagaaaggttgtca tagcaacaaatatagcagaaacaggaattacaataccagatgtggtgtttgtaattgatgcaggaaaagtcaaagaaaac aggtcacaggtcatctccagggcaatggccttattatatgaagttggagcatgtagtggaggtgcgaccttgacccctct aggtcatcacctggccactctacctgtaaatgtccggataggcaagatgcttctttttggtgcaatatttggttatttag aacctgtggctgttattgctgctgccatgacaaccaagtctccgttcgtggcccctctacaaaagttggacctggcccag tctatgaagatgtccatggctgcagcctgttctgaccatctgactgtgtatagggcctatgttggatggaagttagctca gaaaggggcaaaaagtcatgaacaccagttctgtgccaaacattttcttaaaaggaataccttactggaaatagagaatt tgaagtgggacctgatcaaacttgtagagtctataggattctcagatgataaaagctctggaaaaaaggatgcgccagag aatctctacatcagaaattctgaggccacggaaatcccagacctcgaacagaacatggtcgccatggtgaaggctgtggt agcagctgggttgtatcctaacgttgccaaggtaacgtatgatgcccctgtggatgccaaggccaatcccagtgacaaca agtaa |
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Protein
| Protein ID | pfu_aug1.0_1316.1_51278.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1316.1_51278.t1 MTTISVPLDLEQDLIELIQAEHTERTKCKDLSKRITVKKLTDMYTSLSQAGFSQSQIETCMNNTVMYGGDLIDALDWFCL NLPNEKLPSGFSTALEKEEEKIRPKFDAQLQQNVNLPAPSVKLTEIKAKETEKKAPEKGNQRLHSSPIQVFVSNQVKVFE NSRDIAQVKVLSTDDDNDDDAEGISLALRTFLSRRAKNVVNMKDWIMQYAEVESDEDDDDELKDVTNKEENDPNEQYLEF TAKLLDAKAAASQAKSHGNKDKQKELSKIIRELIQRMDTLEKHPKFNPQVKINDIDSEKSDKVPTPVDEISDSILPDSFA EESASDIAQGVSVTMEMESHDQEEEDDECSGFALFEQMASVPEPEEKKPKRSDFDVRNFEYTRQQWTGKSPKQFLIDWCR KHKCEAPKYEKVHVMGNLWRSKTVWMEWQDAEKAAAKKEKVEENKPRDQYITRLMKKLQISEKQSNSDSRCDDDGTLESW EDFEEEDLLVYIDKDSEFSDMEGYQILALHSVLSSSDQSAAFVTPPPGVRKVVIATNIAETGITIPDVVFVIDAGKVKEN RSQVISRAMALLYEVGACSGGATLTPLGHHLATLPVNVRIGKMLLFGAIFGYLEPVAVIAAAMTTKSPFVAPLQKLDLAQ SMKMSMAAACSDHLTVYRAYVGWKLAQKGAKSHEHQFCAKHFLKRNTLLEIENLKWDLIKLVESIGFSDDKSSGKKDAPE NLYIRNSEATEIPDLEQNMVAMVKAVVAAGLYPNVAKVTYDAPVDAKANPSDNK |
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