Gene
| Gene Model ID | pfu_aug1.0_13173.1_39463 |
|---|---|
| Locus | scaffold13173.1 : 7396 ... 20154 : + |
| To GenomeBrowser | scaffold13173.1:7396..20154 |
| Genes list of scaffold | scaffold13173.1 |
| Synonym | NA |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | troponin |
| Description | troponin partial gene. BLAST top hit to AB009368(Chlamys nipponensis akazara). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_13173.1_39463.t1 | 1 | 1 | Troponin | 24 | 146 | 5.6e-28 | 97.6 | 1.5e-31 | 5.6e-28 | 97.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_13173.1_39463.t1 | gi|226481381|emb|CAX73588.1| | Troponin I [Schistosoma japonicum] | 5.0e-25 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 3 |
Transcript
| Transcript ID | pfu_aug1.0_13173.1_39463.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13173.1_39463.t1 atggccgaagaacaagcaagaaaaaagaaatccaagaggaagggtctaggaggccttgaccccgaaaagaagaaaaaact caaaatgttcatcatgtgtcgagccaaggatgaacttgtaagagaggcaaaagaaaaagcgttggaaaaggagaattata ttaactccaaaatgccaaattgtcaaacggacagtctttcagaggctgaacttattaagctgtgcaagtctctccatgat gtggtcgcaaagttagaggaagaattatatgacactgaacaaaagattcgcaaacaggactatgatataaatgctttaac attaaagataaatgacgccaagggtaaatttataaagccagtcctgagaaaagtcaacaaagaaagcaaatttgacaaat tagccaagtcgaaagcagattttcgtgaaaatttgaaacataaggaataa |
|
Protein
| Protein ID | pfu_aug1.0_13173.1_39463.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13173.1_39463.t1 MAEEQARKKKSKRKGLGGLDPEKKKKLKMFIMCRAKDELVREAKEKALEKENYINSKMPNCQTDSLSEAELIKLCKSLHD VVAKLEEELYDTEQKIRKQDYDINALTLKINDAKGKFIKPVLRKVNKESKFDKLAKSKADFRENLKHKE |
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