Gene
Gene Model ID | pfu_aug1.0_13173.1_39463 |
---|---|
Locus | scaffold13173.1 : 7396 ... 20154 : + |
To GenomeBrowser | scaffold13173.1:7396..20154 |
Genes list of scaffold | scaffold13173.1 |
Synonym | NA |
Manual annotation
Study field | Biomineralization |
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Gene name | troponin |
Description | troponin partial gene. BLAST top hit to AB009368(Chlamys nipponensis akazara). |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_13173.1_39463.t1 | 1 | 1 | Troponin | 24 | 146 | 5.6e-28 | 97.6 | 1.5e-31 | 5.6e-28 | 97.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_13173.1_39463.t1 | gi|226481381|emb|CAX73588.1| | Troponin I [Schistosoma japonicum] | 5.0e-25 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-Dshape | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 3 |
Transcript
Transcript ID | pfu_aug1.0_13173.1_39463.t1 |
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Definition | - |
>pfu_aug1.0_13173.1_39463.t1 atggccgaagaacaagcaagaaaaaagaaatccaagaggaagggtctaggaggccttgaccccgaaaagaagaaaaaact caaaatgttcatcatgtgtcgagccaaggatgaacttgtaagagaggcaaaagaaaaagcgttggaaaaggagaattata ttaactccaaaatgccaaattgtcaaacggacagtctttcagaggctgaacttattaagctgtgcaagtctctccatgat gtggtcgcaaagttagaggaagaattatatgacactgaacaaaagattcgcaaacaggactatgatataaatgctttaac attaaagataaatgacgccaagggtaaatttataaagccagtcctgagaaaagtcaacaaagaaagcaaatttgacaaat tagccaagtcgaaagcagattttcgtgaaaatttgaaacataaggaataa |
Protein
Protein ID | pfu_aug1.0_13173.1_39463.t1 |
---|---|
Definition | - |
>pfu_aug1.0_13173.1_39463.t1 MAEEQARKKKSKRKGLGGLDPEKKKKLKMFIMCRAKDELVREAKEKALEKENYINSKMPNCQTDSLSEAELIKLCKSLHD VVAKLEEELYDTEQKIRKQDYDINALTLKINDAKGKFIKPVLRKVNKESKFDKLAKSKADFRENLKHKE |