Gene
| Gene Model ID | pfu_aug1.0_13252.1_03338 |
|---|---|
| Locus | scaffold13252.1 : 19492 ... 30175 : - |
| To GenomeBrowser | scaffold13252.1:19492..30175 |
| Genes list of scaffold | scaffold13252.1 |
| Synonym | pfu_aug2.0_645.1_17677 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_13252.1_03338.t1 | 1 | 1 | zf-RING_2 | 12 | 61 | 1.4e-08 | 34.4 | 7.5e-12 | 1.4e-08 | 34.4 |
| pfu_aug1.0_13252.1_03338.t1 | 2 | 1 | zf-RING_5 | 12 | 62 | 6.8e-07 | 28.9 | 3.6e-10 | 6.8e-07 | 28.9 |
| pfu_aug1.0_13252.1_03338.t1 | 1 | 1 | zf-C3HC4 | 13 | 60 | 6.4e-07 | 28.9 | 3.4e-10 | 6.4e-07 | 28.9 |
| pfu_aug1.0_13252.1_03338.t1 | 4 | 1 | zf-C3HC4_2 | 13 | 60 | 9.2e-07 | 28.7 | 5.0e-10 | 9.2e-07 | 28.7 |
| pfu_aug1.0_13252.1_03338.t1 | 1 | 1 | zf-RING_UBOX | 13 | 58 | 1.6e-06 | 27.7 | 8.6e-10 | 1.6e-06 | 27.7 |
| pfu_aug1.0_13252.1_03338.t1 | 4 | 2 | zf-C3HC4_2 | 94 | 121 | 9.2e-07 | 28.7 | 0.046 | 85.0 | 3.2 |
| pfu_aug1.0_13252.1_03338.t1 | 2 | 2 | zf-RING_5 | 102 | 129 | 6.8e-07 | 28.9 | 0.22 | 410.0 | 0.7 |
| pfu_aug1.0_13252.1_03338.t1 | 4 | 3 | zf-C3HC4_2 | 102 | 129 | 9.2e-07 | 28.7 | 0.7 | 1300.0 | -0.5 |
| pfu_aug1.0_13252.1_03338.t1 | 4 | 4 | zf-C3HC4_2 | 169 | 194 | 9.2e-07 | 28.7 | 0.38 | 700.0 | 0.3 |
Transcript
| Transcript ID | pfu_aug1.0_13252.1_03338.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13252.1_03338.t1 atggcggacatcaagtttctggatgatcttacggagtgcccgatatgttttaatcagtatcagcgaccacgatgtctacc gtgtcttcatacattttgtgaaaagtgtcttaatgaatatattgcgtcacagaagacggatccaacaacaaaggatagaa ccttcaattgcccagtatgccgccattttatcaacgccccttcatcagaattagacgaaactaaatgggcggaaaagttc ccactgaattaccttgtgctcacattgattgatcagaaatcgctccaggaaggtaaactttattgtaatccgtgtaagaa aaagtccaaaaacgaacaatcggtgtcgtggtgcatacagtgcaaaatttccctttgtaaagtttgtgaagaatttcata ctttacttccgatccttgaaaaccataagttagctccattaggagaaaagaaagatgaggcaatgttgctgtcctcggca cacattctatgcggaatccactccgataaacccatcgaaatgttttgtttggaccacaacgtcccttgctgttcaacatg tataatgattacacataggaaatgcgaaaacgtagatacccttgaaagtgtagctgaaaagtcaaagttgtcaaacgtta gagatgagcttgataaaggattttcagaacgactgaaattagttgaagaaagcttatgcaatgatgctacgaatctagat gcaatagatgaaaactgccaaatgataaagggtaggatagagaaagagagagatgctgcaatactacatttgagagcact ttccgacaaagcaatatctgacgtttgccaattccaagacaaacacaaagactcgatggcaggatcgttagaggtgaaaa aaggtagaaaagccaccattgaaaattgtcaaaaacttctgaaggcatcactagaacaatcatcggatgttcagtttttc ctagaatccagaaagcttagacagaaatttgacgaaatggaaaaggaagtacttgagctgcaaacaattcaaaattcaga agcttcatacgaaattcgaaaagaaataagcgctatcatagcgtatgattcatttggtgaattcaaacttggagattcca agacgagtgatgacgatcaaagtatacgtgtgtcatccgaaggaattatgccccaatcttctaattcagaagtagatgtc aagactcaagaagatgaatttcaaatcttaatgttgggcgatccgaaagaaattgatgtagaagcaagtaggtcaaactc ttctgttacaggatgcattttcctggaagatggtcgtttagtgtttactgatttcaaagggcccagttctaacgatggaa ttatcaaaatttatgaaacggacttggaaacattcagaattgtacctttcaaaggcagaccttggagtcttgcaagtctg agttcttcatacataatagtcgccattccacatagttccaaactggttgttttagacacatgggcattcagtatcaaata tactattgaatgtgatagaatgtatttcggtcttgctgttcaaaatcctttgaccgactcatcttcattgtccgatgatg accgtgaaaaatgcacgattttcgtatcatcaaagggagatatctgcctgtttaacttgaatggaaagcgtctaaaagac atttccatatccagcacctacataagagatgagcttgataaaggattttcagaacaactgaaattagttgaagaaaggtt atgcaatgatgctacgaatctagatgcaatagatgaaaattgccaaatgataaaggatagaatagagaaagagagagatg ctgcaatactacatttgagagcactttccgacaaagcaatatctgacgtttgccaattccaagaaaaacaaaaagactcg atggcaggatcattagatgtgaacaaaggtagaaaagccaccattgaaaattgtcaaaaacttctgaaggcatcactaga acaatcatcggatgttcagtttttcgtagaatccagaaagcttggacagaaatttgacgaaatggaaaaggaagtacttg agctgcaaacaattcacaattcagaagtttcatacgaaattcgaaaagaaataagcgctatcatggcgtatgattcattt ggtgaactgaaacttggagattccaagacgagtgatgacgatcaaagtatatgtgtgtcatccgaaggaatgccccaatc ttctaattcagaagtagatgtcgagactaaagaagatgaatttcaaattttaacgttgggcgatccgaaagaaattgatg tagaagcaagtaggtcaaactcttctgttacaggatgcattttcctggaagatggtcgtttagtgtttactgatttcaaa gggcgcagttccaacgatggaattatcaaaatttatgaaacggacttggaaactttcagaattgtacccctcaaaggcaa gccttggagtgtagcaaatctgaattcttcatacatcatagtcaccatcccacatagttccaagctggttgttttagaca catcgacattcagtatcaaacatactattgaatgtgatagaatgtatttcggtcttgctgttcaaaatcctttgtccgac tcatcttcattgtccgatgatgaccgtgaaaaatgcacgattttcgtatcatcaaagggagatatctgcctgttgaactt gaatggaaagcgtctaaaagacatttccatatccagaacctacataaggtacatcgtatacagtttggggagactgtttt gcagtgttggtgataaagttgtctgtacagacgaagatggtcaagtcaaatttgaatttactgatgacagtttagataaa gcaacgggaatagctgtcataagagacggccatttcaaggtttga |
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Protein
| Protein ID | pfu_aug1.0_13252.1_03338.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13252.1_03338.t1 MADIKFLDDLTECPICFNQYQRPRCLPCLHTFCEKCLNEYIASQKTDPTTKDRTFNCPVCRHFINAPSSELDETKWAEKF PLNYLVLTLIDQKSLQEGKLYCNPCKKKSKNEQSVSWCIQCKISLCKVCEEFHTLLPILENHKLAPLGEKKDEAMLLSSA HILCGIHSDKPIEMFCLDHNVPCCSTCIMITHRKCENVDTLESVAEKSKLSNVRDELDKGFSERLKLVEESLCNDATNLD AIDENCQMIKGRIEKERDAAILHLRALSDKAISDVCQFQDKHKDSMAGSLEVKKGRKATIENCQKLLKASLEQSSDVQFF LESRKLRQKFDEMEKEVLELQTIQNSEASYEIRKEISAIIAYDSFGEFKLGDSKTSDDDQSIRVSSEGIMPQSSNSEVDV KTQEDEFQILMLGDPKEIDVEASRSNSSVTGCIFLEDGRLVFTDFKGPSSNDGIIKIYETDLETFRIVPFKGRPWSLASL SSSYIIVAIPHSSKLVVLDTWAFSIKYTIECDRMYFGLAVQNPLTDSSSLSDDDREKCTIFVSSKGDICLFNLNGKRLKD ISISSTYIRDELDKGFSEQLKLVEERLCNDATNLDAIDENCQMIKDRIEKERDAAILHLRALSDKAISDVCQFQEKQKDS MAGSLDVNKGRKATIENCQKLLKASLEQSSDVQFFVESRKLGQKFDEMEKEVLELQTIHNSEVSYEIRKEISAIMAYDSF GELKLGDSKTSDDDQSICVSSEGMPQSSNSEVDVETKEDEFQILTLGDPKEIDVEASRSNSSVTGCIFLEDGRLVFTDFK GRSSNDGIIKIYETDLETFRIVPLKGKPWSVANLNSSYIIVTIPHSSKLVVLDTSTFSIKHTIECDRMYFGLAVQNPLSD SSSLSDDDREKCTIFVSSKGDICLLNLNGKRLKDISISRTYIRYIVYSLGRLFCSVGDKVVCTDEDGQVKFEFTDDSLDK ATGIAVIRDGHFKV |
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