Gene
Gene Model ID | pfu_aug1.0_1330.1_15434 |
---|---|
Locus | scaffold1330.1 : 28191 ... 33445 : - |
To GenomeBrowser | scaffold1330.1:28191..33445 |
Genes list of scaffold | scaffold1330.1 |
Synonym | pfu_aug2.0_1791.1_05239 |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | Pifuc-Fox L1-like |
Description | Reciprocal BLASTP best hit to NCBI accsession ACY92523 (Saccoglossus kowalevskii) |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1330.1_15434.t1 | 1 | 1 | Fork_head | 74 | 169 | 5.32493e-44 | 148.1 | 0.0 | 9.24857e-44 | 147.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_1330.1_15434.t1 | gi|285157676|gb|ADC35033.1| | fox/forkhead [Capitella teleta] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_1330.1_15434.t1 |
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Definition | - |
>pfu_aug1.0_1330.1_15434.t1 atggcttcgccaaacgaacttttgcgagcgcaacacttgtcggctgctgccgctgcaagtggtgggtcaatcgggggact ttatcctcagtacggcgttatggggaccaatatgtcaggatacccgtaccccgcgggactctactaccagtccttggaca tcaaccgcgcctatgctctgcggatgatagaggaaatgcagaggagagaccagccacagaagccaccatattcttacatt gcgctgattgcgatggccattaagaatgcgccggacaggaaagtaactttgaatggaatttaccagtttataatggaacg gttcccatattaccatgacaacaaacaaggatggcagaactctatccggcataatctgagcttgaatgattgcttcatca aagtccctagggaaaagggcaagcctggaaaaggaaactattggactcttgatctgaattgtgaagaaatgttcgaaaat ggaaattatcgtcggagaaaaaggagagtaaaagtgaacaaggatggagaaagccaggaaatcgacgaaacgcaagacgg atctgattgcgacgaggaaaattcagacctgcaaaatacggatgcggatggcgacgacagcggtataaacgtttgttccg aggatgaaaattcgcgcgattcgtctgacttgggaaaagaaagctttgaatgtgtaaaagacaaaccgtcgacgatagaa gtgaggaagagactatttactatagacagtttgataggtgatgattctccacagaatttccatgttacatgtgctagcgc gacagaggaatccagcaaacgcaaaaatacgacggaagtaaatgatggaaacttaaagaaaagaaaatatgacatttttg acaaaattcccagtccacctccaaaagtgattgatttgaagggtcagtcgccaacatctctgcaactctccatagcatcc ggattgtgcagtcccggttatctccgtggatcatcgtctcttatgcatccgcagttttcgtttccgctaccggcttatgc gcagtttggaccatattcgatgcaacaagcgcatccggaattatttcttcggaatcaacaactcgggataagtcacatgc ctgtatccatgggacatagtgacagggaaatcgtttcaagccctaccctgggtcttagatga |
Protein
Protein ID | pfu_aug1.0_1330.1_15434.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1330.1_15434.t1 MASPNELLRAQHLSAAAAASGGSIGGLYPQYGVMGTNMSGYPYPAGLYYQSLDINRAYALRMIEEMQRRDQPQKPPYSYI ALIAMAIKNAPDRKVTLNGIYQFIMERFPYYHDNKQGWQNSIRHNLSLNDCFIKVPREKGKPGKGNYWTLDLNCEEMFEN GNYRRRKRRVKVNKDGESQEIDETQDGSDCDEENSDLQNTDADGDDSGINVCSEDENSRDSSDLGKESFECVKDKPSTIE VRKRLFTIDSLIGDDSPQNFHVTCASATEESSKRKNTTEVNDGNLKKRKYDIFDKIPSPPPKVIDLKGQSPTSLQLSIAS GLCSPGYLRGSSSLMHPQFSFPLPAYAQFGPYSMQQAHPELFLRNQQLGISHMPVSMGHSDREIVSSPTLGLR |