Gene
| Gene Model ID | pfu_aug1.0_1330.1_15434 |
|---|---|
| Locus | scaffold1330.1 : 28191 ... 33445 : - |
| To GenomeBrowser | scaffold1330.1:28191..33445 |
| Genes list of scaffold | scaffold1330.1 |
| Synonym | pfu_aug2.0_1791.1_05239 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | Pifuc-Fox L1-like |
| Description | Reciprocal BLASTP best hit to NCBI accsession ACY92523 (Saccoglossus kowalevskii) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1330.1_15434.t1 | 1 | 1 | Fork_head | 74 | 169 | 5.32493e-44 | 148.1 | 0.0 | 9.24857e-44 | 147.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1330.1_15434.t1 | gi|285157676|gb|ADC35033.1| | fox/forkhead [Capitella teleta] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1330.1_15434.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1330.1_15434.t1 atggcttcgccaaacgaacttttgcgagcgcaacacttgtcggctgctgccgctgcaagtggtgggtcaatcgggggact ttatcctcagtacggcgttatggggaccaatatgtcaggatacccgtaccccgcgggactctactaccagtccttggaca tcaaccgcgcctatgctctgcggatgatagaggaaatgcagaggagagaccagccacagaagccaccatattcttacatt gcgctgattgcgatggccattaagaatgcgccggacaggaaagtaactttgaatggaatttaccagtttataatggaacg gttcccatattaccatgacaacaaacaaggatggcagaactctatccggcataatctgagcttgaatgattgcttcatca aagtccctagggaaaagggcaagcctggaaaaggaaactattggactcttgatctgaattgtgaagaaatgttcgaaaat ggaaattatcgtcggagaaaaaggagagtaaaagtgaacaaggatggagaaagccaggaaatcgacgaaacgcaagacgg atctgattgcgacgaggaaaattcagacctgcaaaatacggatgcggatggcgacgacagcggtataaacgtttgttccg aggatgaaaattcgcgcgattcgtctgacttgggaaaagaaagctttgaatgtgtaaaagacaaaccgtcgacgatagaa gtgaggaagagactatttactatagacagtttgataggtgatgattctccacagaatttccatgttacatgtgctagcgc gacagaggaatccagcaaacgcaaaaatacgacggaagtaaatgatggaaacttaaagaaaagaaaatatgacatttttg acaaaattcccagtccacctccaaaagtgattgatttgaagggtcagtcgccaacatctctgcaactctccatagcatcc ggattgtgcagtcccggttatctccgtggatcatcgtctcttatgcatccgcagttttcgtttccgctaccggcttatgc gcagtttggaccatattcgatgcaacaagcgcatccggaattatttcttcggaatcaacaactcgggataagtcacatgc ctgtatccatgggacatagtgacagggaaatcgtttcaagccctaccctgggtcttagatga |
|
Protein
| Protein ID | pfu_aug1.0_1330.1_15434.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1330.1_15434.t1 MASPNELLRAQHLSAAAAASGGSIGGLYPQYGVMGTNMSGYPYPAGLYYQSLDINRAYALRMIEEMQRRDQPQKPPYSYI ALIAMAIKNAPDRKVTLNGIYQFIMERFPYYHDNKQGWQNSIRHNLSLNDCFIKVPREKGKPGKGNYWTLDLNCEEMFEN GNYRRRKRRVKVNKDGESQEIDETQDGSDCDEENSDLQNTDADGDDSGINVCSEDENSRDSSDLGKESFECVKDKPSTIE VRKRLFTIDSLIGDDSPQNFHVTCASATEESSKRKNTTEVNDGNLKKRKYDIFDKIPSPPPKVIDLKGQSPTSLQLSIAS GLCSPGYLRGSSSLMHPQFSFPLPAYAQFGPYSMQQAHPELFLRNQQLGISHMPVSMGHSDREIVSSPTLGLR |
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