Gene
| Gene Model ID | pfu_aug1.0_1333.1_36957 |
|---|---|
| Locus | scaffold1333.1 : 24566 ... 27085 : + |
| To GenomeBrowser | scaffold1333.1:24566..27085 |
| Genes list of scaffold | scaffold1333.1 |
| Synonym | pfu_aug2.0_1015.1_18027 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1333.1_36957.t1 | 1 | 1 | Ribosomal_L18e | 33 | 158 | 2.4e-37 | 128.2 | 4.19997e-41 | 3.1e-37 | 127.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1333.1_36957.t1 | gi|22758850|gb|AAN05585.1| | ribosomal protein L22 [Argopecten irradians] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1333.1_36957.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1333.1_36957.t1 atgtacctcctcaaacccaaatataaaanattctacttacagactgccaagttaaagaagaccaggaagctgcgtggtca cgtcagtcatggccatggccgtataggtaaacataggaagcatcctggtggtagaggtaacgctggaggccaacatcacc acaggattaactatgataaataccatcctggttattttggtaaagttggtatgagatacttccacaagacaaacaacaaa ttcttctgtcccactgtaaacttagacaaactatggtcgttagtgtcggaacaaacgagagaaaactataaagataaaaa ggacaaggccccagtcatagatgttgtcagagcaggatactataaagttttaggcaaaggacatttacccaagcagcctg ttattgtgaaagcacgattcttcagccattctgccgaaagaaagataaaatctgcgggaggtgcctgtgtcttagtggca taa |
|
Protein
| Protein ID | pfu_aug1.0_1333.1_36957.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1333.1_36957.t1 MYLLKPKYKXFYLQTAKLKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINYDKYHPGYFGKVGMRYFHKTNNK FFCPTVNLDKLWSLVSEQTRENYKDKKDKAPVIDVVRAGYYKVLGKGHLPKQPVIVKARFFSHSAERKIKSAGGACVLVA |
|