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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_133778.1_13851
Locus scaffold133778.1 : 1 ... 1061 : +
To GenomeBrowser scaffold133778.1:1..1061
Genes list of scaffold scaffold133778.1
Synonym pfu_aug2.0_438.1_27393

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_133778.1_13851.t1 1 1 Sugar_tr 1 80 9.6e-21 73.8 5.8e-24 1.1e-20 73.7

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_133778.1_13851.t1 gi|349946394|dbj|GAA30283.1| 2.0e-19

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_133778.1_13851.t1
Definition-
>pfu_aug1.0_133778.1_13851.t1
gacctattccgtttattgtggttggtgagattttccgtcaagaacctagagctgccgccatgagtttgtccttgaccttt
aattgggtctgcaacttcatactgatgttggttttcccattcatttcaaatgctctcaaaggctttgtttatctcccatt
cattgttatcctaatcctggcaattctctttatcttcttcatggtaccggagacaaagaatcgtacttttgacgatatcg
ctgcgtctatttcatttggaaaagcgtacaagtccggaaagaaatcgttgccgaatcaagacggacaagaaatggaaaag
atgacttaa

Protein
Protein IDpfu_aug1.0_133778.1_13851.t1
Definition-
>pfu_aug1.0_133778.1_13851.t1
PIPFIVVGEIFRQEPRAAAMSLSLTFNWVCNFILMLVFPFISNALKGFVYLPFIVILILAILFIFFMVPETKNRTFDDIA
ASISFGKAYKSGKKSLPNQDGQEMEKMT

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