Gene
| Gene Model ID | pfu_aug1.0_1345.1_29692 |
|---|---|
| Locus | scaffold1345.1 : 18416 ... 47375 : + |
| To GenomeBrowser | scaffold1345.1:18416..47375 |
| Genes list of scaffold | scaffold1345.1 |
| Synonym | pfu_aug2.0_663.1_11052 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1345.1_29692.t1 | 1 | 1 | B56 | 86 | 482 | 0.0 | 568.5 | 0.0 | 0.0 | 568.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1345.1_29692.t1 | gi|50726892|ref|NP_998483.1| | serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform [Danio rerio] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| trochophore | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1345.1_29692.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1345.1_29692.t1 atgccaaaaaaggagacaaagaaagaaaagacggtgacaaaaacaacaggcagcgcaaagtcaaccggtaaagaaagcac tgaaaatgcggaaaatgaggcaaagaaaaaagcagcaacacagaatgcaaacaacactgaacatcctcccccagcacaaa tctcaaaattaaaatatacagggggacctcatataaagaaagataagagacagaactcctcgagattcaacatctcaaaa aacagagagctgcagaaactaccattgctcaaagatgctactcctgcagagagagaggaactcttcattcagaagatacg tcagtgttgtgttctatttgactttgtacaagaccctttaagtgatctcaaatttaaggaggtcaagcgtgctgcgctta acgaaatggtggaatttgtcactcacaataggggtgtgataacagacgccatatatccggaatgtatacatatgttctca attaacttattccgagctttacctccgtcgtcaaatccgagtggggcggagtttgaccctgaggaggatgaacctaccct agaggcagcttggccacacctacagttggtgtacgagtttttccttcggtttttagaatcgccagattttcagccaaata caggaaaacgttatatagatcaaaagtttgttttacaacttctagaactgtttgacagtgaggatcctagggaaagagat tttctgaaaacaattttacataggatatatgggaagtttttaggacttagagcttatattaggaaacagattaacaatat tttctataagtatatgtatgaaacggaacatcacaacggtatagctgagttgttagaaattctaggaagtataattaatg gttttgccctaccactgaaagaggagcacaaagtgttcttgttgaaggttttgttgccgttacataaagtgaagtcattg agcgtgtaccacccacagctggcctattgtgtggtacagttcctggagaaggacccaagtctaactgaaccggtcattat gggactattaaagttttggcccaaggtccatagtcctaaagaggtgatgttcctgaatgagttagaggagattcttgatg tgatagaacctgcagagttcacaaaggtcatgtgtccattgttcaaacaattagcaaagtgtgtgtccagtccacatttc caggtggcagaacgcgcactttacttttggaacaatgaatacatcttgagtttgatcagtgataatgcagcaacaatcct gccaattatgttcccagcgctgtataaaagcaaggaacattggaacaagactatacatggtctcatttacaacgccttaa aattgttcatggaaatgaaccagaagttatttgatgattgcacgcagcagtttaaagccgagagactcaactcacaaaga aaagggggaaagacaaaccacttctacggcgaaagtctgagttaccacatgacacaagtatga |
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Protein
| Protein ID | pfu_aug1.0_1345.1_29692.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1345.1_29692.t1 MPKKETKKEKTVTKTTGSAKSTGKESTENAENEAKKKAATQNANNTEHPPPAQISKLKYTGGPHIKKDKRQNSSRFNISK NRELQKLPLLKDATPAEREELFIQKIRQCCVLFDFVQDPLSDLKFKEVKRAALNEMVEFVTHNRGVITDAIYPECIHMFS INLFRALPPSSNPSGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNTGKRYIDQKFVLQLLELFDSEDPRERD FLKTILHRIYGKFLGLRAYIRKQINNIFYKYMYETEHHNGIAELLEILGSIINGFALPLKEEHKVFLLKVLLPLHKVKSL SVYHPQLAYCVVQFLEKDPSLTEPVIMGLLKFWPKVHSPKEVMFLNELEEILDVIEPAEFTKVMCPLFKQLAKCVSSPHF QVAERALYFWNNEYILSLISDNAATILPIMFPALYKSKEHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAERLNSQR KGGKTNHFYGESLSYHMTQV |
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