Gene
| Gene Model ID | pfu_aug1.0_13467.1_39497 |
|---|---|
| Locus | scaffold13467.1 : 1 ... 28315 : - |
| To GenomeBrowser | scaffold13467.1:1..28315 |
| Genes list of scaffold | scaffold13467.1 |
| Synonym | pfu_aug2.0_39.1_30055 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_13467.1_39497.t1 | 2 | 1 | Chromo | 327 | 360 | 1.8e-22 | 78.7 | 3.7e-09 | 1.1e-05 | 24.9 |
| pfu_aug1.0_13467.1_39497.t1 | 2 | 2 | Chromo | 409 | 465 | 1.8e-22 | 78.7 | 3.6e-18 | 1.1e-14 | 53.8 |
| pfu_aug1.0_13467.1_39497.t1 | 1 | 1 | SNF2_N | 485 | 593 | 1.6e-18 | 66.5 | 1.2e-21 | 3.6e-18 | 65.3 |
| pfu_aug1.0_13467.1_39497.t1 | 1 | 1 | Helicase_C | 647 | 726 | 3.0e-14 | 52.6 | 3.0e-17 | 8.8e-14 | 51.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_13467.1_39497.t1 | gi|189233881|ref|XP_970343.2| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_13467.1_39497.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13467.1_39497.t1 atgagcaagagtgctatcgatgaaccagccgattttgacagtccattatttggtcccattagtaatgagaagagtcccaa gtcatcagtacagaggagagacagacaagatagctctagtaaaggagaacatggtgaaggaagtgtgaagaatgcagcgg cttcagaatcagagaattcaagtgggtcaagttcagatgagagtgattcagagtctggctctaaatcagggtcaggttca gattccaattcggggagttcatcaggagatggctctgataatgaaaaatccaaatcggatagtcactctgatggggacag gaacaaaaagccgagaattgacgatactgactcacaggacacccaacaaagtacagccaagaggggaaggccacgcaaat ctagtatcaatgaaatcaaacagatattacgggagatgtctgatgccccagacctactgggattgaggagatcagggaga gcaaaaaaggaaccagttcgttataacgctttggctgacagtgattctgatgataggccaaaaagaagagggcggaggaa agattcggatgattggcaaggtagtggaagtgagagtagtgataatagctctagtgatgatttcaaacctgctccccgaa ttcatgcaaggcaaagaccagttagaacaaaggggagaaaacctttacggggtcgcagacagagacattacactgattca gatgaatctgacagcgatgatccgagacgagtgtcaataaggaacttcacacgacagaaagtaagttataaggaggactc tgatgatcgtactgattcagatgatataatagaggttaactgggaacagacggaggaagatgataacaaagagactatag agaaagtcctagatgatcgcattggaaggaaaatagcaactgggagcaagacgacagtgtacaatgttgaggactctggt gatccaaatgcaggggtggatcgaaaatctgaggaaacggaaaaacaatatctcatcaagtggaagagttgggctcacat acataatacatgggagtcttacaaaacactgaaggaacaaaaggtccatggtctgaaaaaactggataattacatcaaaa agcaagaagaaatcaaagaatggaaagattcggctactccagaggatatagactattttgaggtccagcaggaaatggta caggaactttaccaactacacacaaaggtggaaagaatcatctctcactctaaccagaagatggctaatgaggacaatgg ttatcctgattacttatgtaaatggcagggtctaccttactccgagtgtacatgggaagagggggagttagtgtccagaa aattccaacctttggttgatgagtataatgccagaaataagtcacagaggacacccacctcaagtaaatattgtaggtca tttgacgtcattgcaacttttagtcatagtgaagaatttgaccgatggtcagagtttgaagagaagcactcctcggctca gaatacagggtttgctggtcttcataaggaattagaaccattccttctcaggagagtcaagaaagacgtggaaaagtctc ttccaagcaagactgagcagatattgagagtagaaatggcatctatacaaagacagtattacaaatggattttacaaaag aactataaggctttaagtaaaggtttgaaggggagtgtatcgagctttgtgaacataataatggagcttaagaagtgctg taaccacgcccagttgatacgaccgccagaggaggaacctactgaaagattggcagccttgataaaaggaagtggtaaac taatattactggacaaacttttactaaggctgaaggagtctggacatcgagttcttatattctctcagatggtcagaatg ttggatatactaggcgaatacctacagatgagacactttccattccagagacttgatggttcagttagaggggacatgag gaaacaagctatggaccatttcaatgctgaggattcaaatgatttttgtttcttgttgtctacccgagctggtggattag gtgttaatttagctacagctgatactgtgataatctttgatagtgattggaatcctcagaatgacctgcaggctcaggct agggcccacaggataggccaaaagaaacaggttagtgtatataggttagtgactaaattaagtgtagaagaggacattgt ggaacgtgctaaaaggaaaatggtgctagatcatcttgtcattcagagaatggacacaacgggacgtacggtgctcaata gaggaattccttccagtaattcaacgcctttcaacaaagaagaattatcatccatactcaaatttggtgctgaggaatta tttaaagaaaccgaggacgatgatgaagaacctcagggtcatgatcgtcatataccacatggtcatgacaaacagacaga cagcaagaagcataaacgtccgtccatggagcgcggtgagggagatgcttacactggaaataaacggcaccacaatcagg atcattggtccacacataaaaactattcctcacatcctgaaaggaaaaggaaaggtgatgtcaatccagatagacgatct cacaaagaccctcgcttactggacgaaaatagtcggttctccacgtcaagtcaggacagtttctccaaacattga |
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Protein
| Protein ID | pfu_aug1.0_13467.1_39497.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13467.1_39497.t1 MSKSAIDEPADFDSPLFGPISNEKSPKSSVQRRDRQDSSSKGEHGEGSVKNAAASESENSSGSSSDESDSESGSKSGSGS DSNSGSSSGDGSDNEKSKSDSHSDGDRNKKPRIDDTDSQDTQQSTAKRGRPRKSSINEIKQILREMSDAPDLLGLRRSGR AKKEPVRYNALADSDSDDRPKRRGRRKDSDDWQGSGSESSDNSSSDDFKPAPRIHARQRPVRTKGRKPLRGRRQRHYTDS DESDSDDPRRVSIRNFTRQKVSYKEDSDDRTDSDDIIEVNWEQTEEDDNKETIEKVLDDRIGRKIATGSKTTVYNVEDSG DPNAGVDRKSEETEKQYLIKWKSWAHIHNTWESYKTLKEQKVHGLKKLDNYIKKQEEIKEWKDSATPEDIDYFEVQQEMV QELYQLHTKVERIISHSNQKMANEDNGYPDYLCKWQGLPYSECTWEEGELVSRKFQPLVDEYNARNKSQRTPTSSKYCRS FDVIATFSHSEEFDRWSEFEEKHSSAQNTGFAGLHKELEPFLLRRVKKDVEKSLPSKTEQILRVEMASIQRQYYKWILQK NYKALSKGLKGSVSSFVNIIMELKKCCNHAQLIRPPEEEPTERLAALIKGSGKLILLDKLLLRLKESGHRVLIFSQMVRM LDILGEYLQMRHFPFQRLDGSVRGDMRKQAMDHFNAEDSNDFCFLLSTRAGGLGVNLATADTVIIFDSDWNPQNDLQAQA RAHRIGQKKQVSVYRLVTKLSVEEDIVERAKRKMVLDHLVIQRMDTTGRTVLNRGIPSSNSTPFNKEELSSILKFGAEEL FKETEDDDEEPQGHDRHIPHGHDKQTDSKKHKRPSMERGEGDAYTGNKRHHNQDHWSTHKNYSSHPERKRKGDVNPDRRS HKDPRLLDENSRFSTSSQDSFSKH |
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