Gene
| Gene Model ID | pfu_aug1.0_13468.1_18005 |
|---|---|
| Locus | scaffold13468.1 : 323 ... 7295 : - |
| To GenomeBrowser | scaffold13468.1:323..7295 |
| Genes list of scaffold | scaffold13468.1 |
| Synonym | pfu_aug2.0_3.1_10024 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_13468.1_18005.t1 | 1 | 1 | Epimerase | 11 | 237 | 1.0e-38 | 133.0 | 8.2004e-42 | 1.4e-38 | 132.7 |
| pfu_aug1.0_13468.1_18005.t1 | 1 | 1 | RmlD_sub_bind | 11 | 175 | 9.6e-19 | 67.3 | 6.7e-22 | 1.1e-18 | 67.1 |
| pfu_aug1.0_13468.1_18005.t1 | 1 | 1 | Polysacc_synt_2 | 11 | 160 | 3.3e-13 | 49.1 | 7.2e-16 | 1.2e-12 | 47.3 |
| pfu_aug1.0_13468.1_18005.t1 | 1 | 1 | NAD_binding_10 | 11 | 162 | 2.3e-06 | 27.7 | 2.4e-09 | 4.0e-06 | 26.9 |
| pfu_aug1.0_13468.1_18005.t1 | 1 | 1 | 3Beta_HSD | 12 | 177 | 6.9e-21 | 74.1 | 5.8e-24 | 9.6e-21 | 73.7 |
| pfu_aug1.0_13468.1_18005.t1 | 1 | 1 | NAD_binding_4 | 13 | 163 | 5.8e-12 | 45.0 | 6.0e-13 | 9.9e-10 | 37.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_13468.1_18005.t1 | gi|291230305|ref|XP_002735108.1| | PREDICTED: putative UDP-arabinose 4-epimerase 4-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_13468.1_18005.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13468.1_18005.t1 atgcaatgcgctacaagcagtaaaggtcacgtgatggtgacaggaggggcgggataccttggatccaccctagtcccgat cctattggaggacggatatgaggtcacagtgtttgaaaaattttcctggggagtttcgtctttgctacctgtcgcccaac acccaaaactaaacattgtgatgggtgatatccgagtcaagaaagagcttgaagaaattatcgcggacaaggacgccatt attcatttggcggccattgttggttatcccgcgtgcgataaggacccggatcaggctatcgatgtaaacgtcatcgggac ccggaatatcgtcgagctaaaacgcccggatcaagcactgatatatgcaagtaccggatcttgctacggagcagttgacg gcatttgtacggaagaaacccagatcagtcctcttactttatacggaagtagcaaagcggatgctgagaagatggtctta aaggccggtggtatcggactccgtttggccacggttttcggactatcgcctcggttacgactggatctcctgatcaatga ccttacatacaaagccctcacaatgaaagaattcgatctgtacgaaggatccttccgccgtaccttcctccatgtgaaag acgccgcaagagcattcgctttcgctttgaataattacggcataatgaaaggacaagcttataatgtgggtgacgaggct atgaacatgacaaagtcaagggttgcacagctaattcaacaaaacgtcaaaggctgcgtcatcacggaatctaaatctgg ggaagacaaagataagagagattacgaagtttcgtacgccaaaatacgaaacctcggcttcacatcaaccatcacagtag aacaaggcataaaagacatgttgaaagttttaccgttcatggacaaaggagatctgtcaaaatgcaaaaatgtgtga |
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Protein
| Protein ID | pfu_aug1.0_13468.1_18005.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13468.1_18005.t1 MQCATSSKGHVMVTGGAGYLGSTLVPILLEDGYEVTVFEKFSWGVSSLLPVAQHPKLNIVMGDIRVKKELEEIIADKDAI IHLAAIVGYPACDKDPDQAIDVNVIGTRNIVELKRPDQALIYASTGSCYGAVDGICTEETQISPLTLYGSSKADAEKMVL KAGGIGLRLATVFGLSPRLRLDLLINDLTYKALTMKEFDLYEGSFRRTFLHVKDAARAFAFALNNYGIMKGQAYNVGDEA MNMTKSRVAQLIQQNVKGCVITESKSGEDKDKRDYEVSYAKIRNLGFTSTITVEQGIKDMLKVLPFMDKGDLSKCKNV |
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