Gene
Gene Model ID | pfu_aug1.0_13522.1_61223 |
---|---|
Locus | scaffold13522.1 : 8646 ... 30305 : + |
To GenomeBrowser | scaffold13522.1:8646..30305 |
Genes list of scaffold | scaffold13522.1 |
Synonym | pfu_aug2.0_366.1_20664 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_13522.1_61223.t1 | 1 | 1 | BP28CT | 9 | 130 | 2.6e-36 | 124.6 | 1.0e-39 | 3.8e-36 | 124.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_13522.1_61223.t1 | gi|260818051|ref|XP_002603898.1| | hypothetical protein BRAFLDRAFT_129998 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues | |
maleGonad | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_13522.1_61223.t1 |
---|---|
Definition | - |
>pfu_aug1.0_13522.1_61223.t1 atgtatagaaaacaagttcccatacctcagatatctgacgttgaggagacagtgctaagtacatttgtttctctggtaat gaagctatcagaggcaacgtttagaccaatcctattcaagttatttgattgggcaacacgtgatgacagtacaagacaca gagtccttgttttctacagacttgcaaacagattgtccgagaagttgcggagtcttttcaccatatttgctgggcatatc attcaacatgctgcccaaacactagatactcacaacatatctaaaaaagataaaacaccttttggaaaagccaagttgtt gaccaatcagcttttgcagtacataatggactgtctatatcactgtttcctgtatgacactgaaggatttgtcaataagg aaagatttgacaccctcatgcagccattggttgatcagatagagaatttggacaaaccaaagttttaccaatcccgtgta gttgaccatttggtgccatgtatcatacagtttgctgtagcagctcaggatgattctctgtggaaagccatgaattacca aatactactgaaaaccagacacaattctcctaaagtatttgacgacccagtgggctatggttttgtggtccgaggtgaag gtccagcatacatccaaaccattgatccatcaggaccagcggcggctgcaggtctgaaggttcgccagtacgtgtattct gtcaacggtgagaatgttttacgtagggaccaccgatcggtcgccaggctgatcatgcgcagttcaccttatgtcaacat ttgcgtcatgactcataaacgagatgcagattga |
Protein
Protein ID | pfu_aug1.0_13522.1_61223.t1 |
---|---|
Definition | - |
>pfu_aug1.0_13522.1_61223.t1 MYRKQVPIPQISDVEETVLSTFVSLVMKLSEATFRPILFKLFDWATRDDSTRHRVLVFYRLANRLSEKLRSLFTIFAGHI IQHAAQTLDTHNISKKDKTPFGKAKLLTNQLLQYIMDCLYHCFLYDTEGFVNKERFDTLMQPLVDQIENLDKPKFYQSRV VDHLVPCIIQFAVAAQDDSLWKAMNYQILLKTRHNSPKVFDDPVGYGFVVRGEGPAYIQTIDPSGPAAAAGLKVRQYVYS VNGENVLRRDHRSVARLIMRSSPYVNICVMTHKRDAD |