Gene
| Gene Model ID | pfu_aug1.0_13522.1_61224 |
|---|---|
| Locus | scaffold13522.1 : 30456 ... 60274 : + |
| To GenomeBrowser | scaffold13522.1:30456..60274 |
| Genes list of scaffold | scaffold13522.1 |
| Synonym | pfu_aug2.0_366.1_20666 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | Pf-vasa-like protein |
| Description | reciprocal BLASTP best hit to NCBI Accession BAG55012.1 (Saccostrea kegaki vasa). Helicase C domain. Continues from pfu_aug1.0_120090.1_21080.t1 |
| mRNA evidence |
| Study field | Reproduction |
|---|---|
| Gene name | Pifuc-vasa-like |
| Description | Helicase C domain. Reciprocal BLAST best hit to NCBI BAG55012 (Saccostrea kegaki). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_13522.1_61224.t1 | 1 | 1 | Helicase_C | 120 | 179 | 8.6e-23 | 80.0 | 2.9e-26 | 1.4e-22 | 79.2 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
| maleGonad | 3 |
| mantleEdge | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_13522.1_61224.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13522.1_61224.t1 atgataccaccggtatcgaccggtatgtacctaccttgccgttatgtggaacacgcaggtctatcataccaccggtatcg accggtatgtacctaccttgccgttatgtggaacacgcaggtctatcataccaccggtatcaaccgaaaagttcaaagtc ggatgcgattcgtcaatatcaactgtactcgtcttggaaaaaaacagttttacaccaaaatcaagggctttgtaagaagg acaagtgatgaacaattgtcgccgacaatcgattgtcgatcgctaaatctctttcgattccgattaccgatttcattttc ttacgatcgattgtcgctgaaagaaagagatcggttacaagcagaacgagaggaggcattaaaggattttaagactggca aggctccgatattaatagccacatctgtagccgctagaggtttggatatcccacttgttaaacatgtcataaactatgat ctgccaaacagaatcgaggagtacgtccacagaattggtagaactggacgttgtggtaatctgggcaaggccacaagttt ctactcccacgatacagacagtgacatggctaaaccactcgtacgagttctggctgatgcccagcaggaagtcccagact ggttagagaagtacgccgagtcgtctatgtcgtacggtggtggatctaacgtgagctctggcttcggtggcagagatata cgcagagatcaacccaggggggctgaatatttagaatattcatggggaatcgaggatgacttcagtgcaacaatttttta tgccccntacttaacagaaaatagtgttcatactaacaaagatgccaccgggggcattcgtgtttcacaaacacaggctt tattcacatttctgccaaggaccagagggtgtgatatgactgaaaaaggtcaaggttacagtacagtacacctgataaaa ccttgtctgggtcgtatcttctttttctctacatga |
|
Protein
| Protein ID | pfu_aug1.0_13522.1_61224.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13522.1_61224.t1 MIPPVSTGMYLPCRYVEHAGLSYHRYRPVCTYLAVMWNTQVYHTTGINRKVQSRMRFVNINCTRLGKKQFYTKIKGFVRR TSDEQLSPTIDCRSLNLFRFRLPISFSYDRLSLKERDRLQAEREEALKDFKTGKAPILIATSVAARGLDIPLVKHVINYD LPNRIEEYVHRIGRTGRCGNLGKATSFYSHDTDSDMAKPLVRVLADAQQEVPDWLEKYAESSMSYGGGSNVSSGFGGRDI RRDQPRGAEYLEYSWGIEDDFSATIFYAXYLTENSVHTNKDATGGIRVSQTQALFTFLPRTRGCDMTEKGQGYSTVHLIK PCLGRIFFFST |
|