Gene
| Gene Model ID | pfu_aug1.0_1353.1_58448 |
|---|---|
| Locus | scaffold1353.1 : 66160 ... 86505 : - |
| To GenomeBrowser | scaffold1353.1:66160..86505 |
| Genes list of scaffold | scaffold1353.1 |
| Synonym | pfu_aug2.0_50.1_00128 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1353.1_58448.t1 | 2 | 1 | UPF0183 | 1 | 65 | 0.0 | 395.0 | 2.0e-32 | 2.9e-28 | 98.5 |
| pfu_aug1.0_1353.1_58448.t1 | 2 | 2 | UPF0183 | 67 | 260 | 0.0 | 395.0 | 0.0 | 0.0 | 297.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1353.1_58448.t1 | gi|71895577|ref|NP_001025736.1| | UPF0183 protein C16orf70 homolog [Gallus gallus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_1353.1_58448.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1353.1_58448.t1 atggatctcgtccttaacctctcccatgatggaatacgactcatatttgatcctatttctcaaagattaaagattataga agtcaataatatgtcaaaagtgcggttaaaatattgcggtgttcatttcaattctcctcaagttcaacctaccatagagc aaattgaccaatcatttggtgcaactcaccctggtggtaatggtccgggtaaagtactagacccaaagaagaaagtagta gaaaggatagttcactttggtgactcaagtcaggacgtagttagtgccttaggaagccctagtcgagtgttttataaagc tgaggacaagatgaagattcattccccgaacgctcataaacgaatacgatgtggcagctcagattacttctacaattact tcaccatgggattggacgtactgttcgatgctaatactcatcaagtcaaaaagttcatcctccatacaaattttcctggt cattataacttcaatatgtactgtcgttgtgaattcaaactaccagtcgtggtggattcagtaaaaccaaagtcagcaca gctagtatcaacatctgatgatgatgtcattattacagcttattctaagtgggacagtgtgcaaaagtacctagtaaaac cagaacagagacccgtcatccttaacaggtcctcatctaccaacaccagtaatccttttggatctactttctgttttgga gttcaagatcttatatttgaggtgatgcagaatcagcatatagcctcggtgacattatacaaaccaaaaatgccgtcatc taccagcaaggagccatcttga |
|
Protein
| Protein ID | pfu_aug1.0_1353.1_58448.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1353.1_58448.t1 MDLVLNLSHDGIRLIFDPISQRLKIIEVNNMSKVRLKYCGVHFNSPQVQPTIEQIDQSFGATHPGGNGPGKVLDPKKKVV ERIVHFGDSSQDVVSALGSPSRVFYKAEDKMKIHSPNAHKRIRCGSSDYFYNYFTMGLDVLFDANTHQVKKFILHTNFPG HYNFNMYCRCEFKLPVVVDSVKPKSAQLVSTSDDDVIITAYSKWDSVQKYLVKPEQRPVILNRSSSTNTSNPFGSTFCFG VQDLIFEVMQNQHIASVTLYKPKMPSSTSKEPS |
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