Gene
| Gene Model ID | pfu_aug1.0_1353.1_58453 |
|---|---|
| Locus | scaffold1353.1 : 160497 ... 177028 : - |
| To GenomeBrowser | scaffold1353.1:160497..177028 |
| Genes list of scaffold | scaffold1353.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1353.1_58453.t1 | 3 | 1 | WD40 | 1 | 31 | 5.3e-20 | 70.5 | 4.0e-16 | 5.9e-12 | 44.9 |
| pfu_aug1.0_1353.1_58453.t1 | 3 | 2 | WD40 | 35 | 70 | 5.3e-20 | 70.5 | 2.9e-09 | 4.3e-05 | 23.2 |
| pfu_aug1.0_1353.1_58453.t1 | 3 | 3 | WD40 | 93 | 113 | 5.3e-20 | 70.5 | 0.38 | 5700.0 | -2.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1353.1_58453.t1 | gi|47498030|ref|NP_998874.1| | katanin p80 WD40 repeat-containing subunit B1 [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_1353.1_58453.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1353.1_58453.t1 ggtcacaaaaatggtgtgaattgtgttcgatttagtccggacggtaaatggattgcctcagctggagaagataatttagt taagatatgggacattactgctggtaaaatcctgacagacctaacttaccatagagggcctgttaatattgtagaattcc atcctaacgagttactgcttgcctctggaagctcagacagtggtgtaaaagacatgctcaaagtttattcgtgggaacca tctaaatgttacgactctatccctatagcgtggggagaagtatgtgatatagctataggacaaaaccaactgataggtgc ttctttatcacaaacaattgtttcaacatatgttgtggatttaaagcgagtccagccgtttggtggggtgccacatcagg agggtggaaataacttgtcaagcattcctaaggaatcagatgatgaaccaacacaagacaaagaagatgctgatgactct acgtcatttgatataaagaacccagaggactatagagaaatattccaacctaaatccagactgtctcactccccccacag acaaatggaaccgttccaaccacccctagatgatggtacgtcccaagctaagaagtctgtctccattacctcaccccgcg ttacctcagtcaaacgtgctaattctaccgaacatgtccgtaaatcttcagcagaacgaccttcacctttacggaaaagt cgatctaccaagtcaataacagacgatggtaggattgtttacaattataagcatggggattatgtacttgattataaacc ggtaatcgcattggtggaagtgattcttatagcttag |
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Protein
| Protein ID | pfu_aug1.0_1353.1_58453.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1353.1_58453.t1 GHKNGVNCVRFSPDGKWIASAGEDNLVKIWDITAGKILTDLTYHRGPVNIVEFHPNELLLASGSSDSGVKDMLKVYSWEP SKCYDSIPIAWGEVCDIAIGQNQLIGASLSQTIVSTYVVDLKRVQPFGGVPHQEGGNNLSSIPKESDDEPTQDKEDADDS TSFDIKNPEDYREIFQPKSRLSHSPHRQMEPFQPPLDDGTSQAKKSVSITSPRVTSVKRANSTEHVRKSSAERPSPLRKS RSTKSITDDGRIVYNYKHGDYVLDYKPVIALVEVILIA |
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