Gene
| Gene Model ID | pfu_aug1.0_1357.1_22557 |
|---|---|
| Locus | scaffold1357.1 : 40272 ... 46235 : - |
| To GenomeBrowser | scaffold1357.1:40272..46235 |
| Genes list of scaffold | scaffold1357.1 |
| Synonym | pfu_aug2.0_113.1_10280 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1357.1_22557.t1 | 2 | 1 | DUF4558 | 10 | 20 | 4.3e-17 | 61.8 | 0.64 | 3100.0 | -1.9 |
| pfu_aug1.0_1357.1_22557.t1 | 2 | 2 | DUF4558 | 33 | 119 | 4.3e-17 | 61.8 | 8.8e-21 | 4.3e-17 | 61.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1357.1_22557.t1 | gi|198436647|ref|XP_002128814.1| | PREDICTED: uncharacterized protein C1orf189 homolog [Ciona intestinalis] | 5.0e-20 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1357.1_22557.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1357.1_22557.t1 atgagtatgtcaacaacgcttcgatatgaaattaatctgagcaatccgagacttaaagaggcattcagtcgacaacaaga aagaatccagaaagatgaaatgatggctgacagagagaatgtcgtaaggctggagaagaatacgaatctcagggcagagt ggaatgaaaatttagagaaagcatcttggaacaaaaggattgaacatgaaaataaattaataaaagatgaaatgagacaa gcagctaaagcctcattagcagtaagaagaacagcattacaacagctcatagcaaaagagaaggatatgtatgaacaaga gctccatctactgggaaaaacattcttcaagcagagaatatga |
|
Protein
| Protein ID | pfu_aug1.0_1357.1_22557.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1357.1_22557.t1 MSMSTTLRYEINLSNPRLKEAFSRQQERIQKDEMMADRENVVRLEKNTNLRAEWNENLEKASWNKRIEHENKLIKDEMRQ AAKASLAVRRTALQQLIAKEKDMYEQELHLLGKTFFKQRI |
|