Gene
| Gene Model ID | pfu_aug1.0_13598.1_53982 |
|---|---|
| Locus | scaffold13598.1 : 12716 ... 18764 : + |
| To GenomeBrowser | scaffold13598.1:12716..18764 |
| Genes list of scaffold | scaffold13598.1 |
| Synonym | pfu_aug2.0_701.1_04498 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | galectin |
| Description | BLASTP best hit to NCBI Accession FJ267519 |
| mRNA evidence |
| Study field | immunity |
|---|---|
| Gene name | Garectin-2 |
| Description | reciprocal BLASTN best hit to NCBI Accession HQ014601 and FJ267519 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_13598.1_53982.t1 | 2 | 1 | Gal-bind_lectin | 14 | 145 | 0.0 | 265.1 | 4.2039e-45 | 6.89999e-41 | 138.6 |
| pfu_aug1.0_13598.1_53982.t1 | 2 | 2 | Gal-bind_lectin | 212 | 346 | 0.0 | 265.1 | 9.3e-41 | 1.4e-36 | 124.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_13598.1_53982.t1 | gi|316936680|gb|ADU60337.1| | tandem-repeat galectin [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_13598.1_53982.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13598.1_53982.t1 atggcatataacgctagcaccgtagtcaacccaccaataccctatgttggtggtataccagggggattgaaagttggtac ccagatcatcataaacgcaacgttaccttaccacgaaaaccagttttctatcaatttacaatgcggtccaaatctcaatc cgaagtccaacacagcgctgcactttaatcctagaccaaatgaggggtgtatcgtgaggaactcccttcagcaccactcc tggggcgccgaagaaagacacgggggttgtcctatcaacaagggacaaccatttgagattatcatactgtgtcagatgaa ccactataaggtgtccgttaacggtcggcatttctgtgattttcgtcatcgtatcgacagaaaccacgttaacacgttaa cggtagaaggcggtgttcaagttaacagtattagatttgatggtcatggaggtcatcaccatggacaccacggtcaccac catggacacggagtaggcggttttattggaaatgttgttggcggcgctattaaggcagctatggggccaccatcctaccc cgcgggtcaggttcatcccccacccccgtctggaggggcacctggacaacccatgtataatccgccagtacccctaacca cacagataccaggtggcttctatccagggagaatgatcttcatcagcggtgtacccaattttaacgcttctagattcaca ataaatctacagtgtgggccttacgagggtagtgacattgccctacactgtgacatgcgcctgagggtgggaggggacat gaacgtgatagtaaggaatagctgtcaaggaggtgggtggggagcagaggagagacatagtccatacttcccctttatgc ctaatgcaaattttgacatgataatcatggcagagggaaatcagtttaagattgctgtaaataatcaacatctgttagaa ttctatcatcgccttcagccactgacacgtatagacaccttattggtcaaaggtgatcttagactgacccaggtacgcat acagtga |
|
Protein
| Protein ID | pfu_aug1.0_13598.1_53982.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13598.1_53982.t1 MAYNASTVVNPPIPYVGGIPGGLKVGTQIIINATLPYHENQFSINLQCGPNLNPKSNTALHFNPRPNEGCIVRNSLQHHS WGAEERHGGCPINKGQPFEIIILCQMNHYKVSVNGRHFCDFRHRIDRNHVNTLTVEGGVQVNSIRFDGHGGHHHGHHGHH HGHGVGGFIGNVVGGAIKAAMGPPSYPAGQVHPPPPSGGAPGQPMYNPPVPLTTQIPGGFYPGRMIFISGVPNFNASRFT INLQCGPYEGSDIALHCDMRLRVGGDMNVIVRNSCQGGGWGAEERHSPYFPFMPNANFDMIIMAEGNQFKIAVNNQHLLE FYHRLQPLTRIDTLLVKGDLRLTQVRIQ |
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