Gene
| Gene Model ID | pfu_aug1.0_1362.1_15443 |
|---|---|
| Locus | scaffold1362.1 : 41536 ... 56162 : + |
| To GenomeBrowser | scaffold1362.1:41536..56162 |
| Genes list of scaffold | scaffold1362.1 |
| Synonym | pfu_aug2.0_2240.1_02060 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-clockwork orange |
| Description | Best hit to BAG64825 unnamed protein product [Homo sapiens] with 9e-22 by a BLASTP search against NCBI Homo sapiens nr database. The predicted protein has a Hairy_orange domain, but does not have a YRPW motif. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1362.1_15443.t1 | 1 | 1 | HLH | 86 | 139 | 1.3e-15 | 56.8 | 3.6e-19 | 2.7e-15 | 55.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1362.1_15443.t1 | gi|110761895|ref|XP_001121958.1| | PREDICTED: hairy/enhancer-of-split related with YRPW motif protein 1-like isoform X1 [Apis mellifera] | 2.0e-32 |
Transcript
| Transcript ID | pfu_aug1.0_1362.1_15443.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1362.1_15443.t1 atggaggggtgtgtgtgcaaactaataagtttaaaacttggttatatctctcgaaacatcaatgtgattgaggaaacagt gttttcaagaagtggacattcagaaaatggtagattaatcatggacggagacttagaagaacagggaccgaaaagaatca agttagagattgcagatcggccattgaactttgcaatcaatccagatgactatgacatccagtgtgtcaagaaaccaaag acccccagggaccccatgtcccatcggatcattgagaaaagaagaagggatcggatgaataactgtctagctgagcttag tcgcctgatcccctctaattatctgaagcagggccaaggtcgtattgagaagacagaaattatagaaatggcttcaaaac acatccgtcatcttcagaacttgaccaattttcacggcgggaaaatggagcagttccatgtagacggcaaaggtcgacat tgctgtgaggagaagttttacatgggttttaaagagtgccaggacgagatgctgcgatacttgatagaggtggaggggcg agatataaaagagggtctgtgcacaggagtcatatcacatctagatcaaactagcaagaagttcctgctcaacccatcag tagtagataaagagccattaggagatgacaaaaaagaagagaacattcattaccttattgacgactgtagtcgatctagc gatcagtccatagcagtgcccatgtatcaacctaacatggacagtccagggatgccgaatgcatcgtacaatacacaaca caactcccagagtttacagaacagtgggaatggaggaaacaaaaataactatctgcgcactttgctaatgccaaaggatc tggagtctgggatgcctggatcaggtatgagtggccttaatggtgtgcgatctccgttaaaggatggatgtggacagatg ctctctgttggtaatatggagagcacatatggcagctcgagagctgacgccaatatgtcagtaaatggtagtggtataag tgacagactttccaacagcagcagtggtggcagtgaaaagacactgaacgtgtgcgactcggatcagagtagtaactcgt atgcagcaagtggatctggcaatattagtaacggaggaagctctcatgatagttcagtgtataaattcaaacataacatc acaaaacgtttctcgcaagaagaaaagcgcgagcttcatccagcaccacccagtgatacatcatcaagtagctcaagaga agaggagatggaaaaagtcaaacgaaagtatccgcgtcaattcattcggcacaaggctcgaggaaatgcactggattctt ctcagtcagggcttgagaatccattgatctacccgaacaataagtacggacatggaatatcaaatgtgtattcccactgt aatgaaaaagatgaatcgggtgcgatggatgttcccttgccggcatttgtcttgaatcccgatggtacacattatatacc tatatccatacatccgtcacacttgggcaacatcatacccaaaaaggaaagttctgaactgcagacatatcacccgataa gtattcctgtgaacttcggagggccacacattacaatgcggagcattagcaccatgcctccaaacaacaccaatgcgctt gacttgccaaaagcctga |
|
Protein
| Protein ID | pfu_aug1.0_1362.1_15443.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1362.1_15443.t1 MEGCVCKLISLKLGYISRNINVIEETVFSRSGHSENGRLIMDGDLEEQGPKRIKLEIADRPLNFAINPDDYDIQCVKKPK TPRDPMSHRIIEKRRRDRMNNCLAELSRLIPSNYLKQGQGRIEKTEIIEMASKHIRHLQNLTNFHGGKMEQFHVDGKGRH CCEEKFYMGFKECQDEMLRYLIEVEGRDIKEGLCTGVISHLDQTSKKFLLNPSVVDKEPLGDDKKEENIHYLIDDCSRSS DQSIAVPMYQPNMDSPGMPNASYNTQHNSQSLQNSGNGGNKNNYLRTLLMPKDLESGMPGSGMSGLNGVRSPLKDGCGQM LSVGNMESTYGSSRADANMSVNGSGISDRLSNSSSGGSEKTLNVCDSDQSSNSYAASGSGNISNGGSSHDSSVYKFKHNI TKRFSQEEKRELHPAPPSDTSSSSSREEEMEKVKRKYPRQFIRHKARGNALDSSQSGLENPLIYPNNKYGHGISNVYSHC NEKDESGAMDVPLPAFVLNPDGTHYIPISIHPSHLGNIIPKKESSELQTYHPISIPVNFGGPHITMRSISTMPPNNTNAL DLPKA |
|