Gene
| Gene Model ID | pfu_aug1.0_1374.1_58471 |
|---|---|
| Locus | scaffold1374.1 : 14626 ... 24876 : + |
| To GenomeBrowser | scaffold1374.1:14626..24876 |
| Genes list of scaffold | scaffold1374.1 |
| Synonym | NA |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | Tbx2/3 |
| Description | BLAST hits to Tbx2 and Tbx3.Simple NJ tree shows an affinity to HsTbx2 and HsTbx3. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1374.1_58471.t1 | 1 | 1 | T-box | 78 | 198 | 0.0 | 180.9 | 0.0 | 0.0 | 180.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1374.1_58471.t1 | gi|115668687|ref|XP_797010.2| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1374.1_58471.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1374.1_58471.t1 atgtacgaggacgacttgatatcacagaggcaccgggccttccccctcagccacgggctgatgcataccccacaggcttt ttcttttggattccctgttcacccagctcatgacccgatgggtctatcaagccagagtcagcagtttgggggatacccgc cactcccctcccattccgaccataagaggatgctgggacccccacagggagactcaatggataagaacattaagatcagt ctggagaacagagacctgtggagcaaattccataatatcgggaccgagatgatcatcacaaagaccggaagacgcatgtt cccaaccctaaaggtcaacttggaaggccttgatccacattctaaatatatcctcctggttgacatcgtacccgtggacg actgtagatacaagtaccataactccgaatgggtcgtgacaggaaaagcggaacctcacatgccgggtagactctacatt cacccagactcaccagcttccggttcgcattggatgaaacagccgctaacttttcacaaactcaaactcaccaacaacaa cttggatcaaaacggacacagtgtttcaaaatcctttttcttcgtggtcttccattatattgatagaaatggaattattg aatttgaatttctagatcaccgactaagcatgaaaagaccagcaagcgacgacggattgacagatctcggaaaagacaat tcatactcaaagaagatcaaactagaggagaatgaagtcgatcgaccatcagctattgtgcaacagagagtaaaatccga cgaggaaacggatcagaacgtgtccagtaattcagaagaatctcactcggacggacaagaacccgacttgtctccttgcc agttgaagacatcacccgccatgcccagtgggagctccctgaataaggcgcccagcccggtggatcatcatgcgcccact ctacagtccagtcattgtcagtatatgggcgccgggagtaagccattctcccagtcgtgtatgggaaccagcgaccaaat ttactatcctcaccattctcccgtcaacaggacatctcccgggagctcatttctcccggtctcctctacctcgggtctcc ttccctcttcatccagtctcagccttcacagtatgaaccagatgcaggcatgccgactctcacaaccaagcagcgactgc gctctgagacaatcatccgggcacctgtcatcttcaagtcacagcgcttatggcggactacggggaacgcctcctccttc tcagcacccttcactgccatcctgtacgtacatgcagccgacacagccctacacgtctcatttggcgccaaacgtgcaca tgatgaacatgaattttcccggaccaatggcatga |
|
Protein
| Protein ID | pfu_aug1.0_1374.1_58471.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1374.1_58471.t1 MYEDDLISQRHRAFPLSHGLMHTPQAFSFGFPVHPAHDPMGLSSQSQQFGGYPPLPSHSDHKRMLGPPQGDSMDKNIKIS LENRDLWSKFHNIGTEMIITKTGRRMFPTLKVNLEGLDPHSKYILLVDIVPVDDCRYKYHNSEWVVTGKAEPHMPGRLYI HPDSPASGSHWMKQPLTFHKLKLTNNNLDQNGHSVSKSFFFVVFHYIDRNGIIEFEFLDHRLSMKRPASDDGLTDLGKDN SYSKKIKLEENEVDRPSAIVQQRVKSDEETDQNVSSNSEESHSDGQEPDLSPCQLKTSPAMPSGSSLNKAPSPVDHHAPT LQSSHCQYMGAGSKPFSQSCMGTSDQIYYPHHSPVNRTSPGSSFLPVSSTSGLLPSSSSLSLHSMNQMQACRLSQPSSDC ALRQSSGHLSSSSHSAYGGLRGTPPPSQHPSLPSCTYMQPTQPYTSHLAPNVHMMNMNFPGPMA |
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