Gene
| Gene Model ID | pfu_aug1.0_1385.1_07922 |
|---|---|
| Locus | scaffold1385.1 : 1 ... 7735 : - |
| To GenomeBrowser | scaffold1385.1:1..7735 |
| Genes list of scaffold | scaffold1385.1 |
| Synonym | pfu_aug2.0_645.1_17676 |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | paramyosin |
| Description | Paramyosin partial sequence. BLASTP top hit to AB016070 (Mytilus galloprovincialis). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1385.1_07922.t1 | 2 | 1 | Myosin_tail_1 | 63 | 259 | 0.0 | 421.7 | 0.0 | 1.26117e-44 | 152.1 |
| pfu_aug1.0_1385.1_07922.t1 | 5 | 1 | Reo_sigmaC | 68 | 147 | 1.8e-06 | 27.3 | 0.00038 | 0.33 | 10.0 |
| pfu_aug1.0_1385.1_07922.t1 | 3 | 1 | Filament | 72 | 159 | 6.1e-09 | 35.7 | 0.0023 | 2.0 | 7.8 |
| pfu_aug1.0_1385.1_07922.t1 | 3 | 1 | Tropomyosin | 85 | 260 | 6.4e-07 | 28.7 | 0.24 | 210.0 | 0.8 |
| pfu_aug1.0_1385.1_07922.t1 | 5 | 1 | IncA | 88 | 165 | 3.5e-06 | 26.7 | 0.0022 | 1.9 | 8.0 |
| pfu_aug1.0_1385.1_07922.t1 | 5 | 2 | Reo_sigmaC | 154 | 239 | 1.8e-06 | 27.3 | 0.0001 | 0.09 | 11.9 |
| pfu_aug1.0_1385.1_07922.t1 | 3 | 2 | Filament | 164 | 251 | 6.1e-09 | 35.7 | 9.8e-07 | 0.00085 | 18.8 |
| pfu_aug1.0_1385.1_07922.t1 | 5 | 2 | IncA | 171 | 248 | 3.5e-06 | 26.7 | 0.00015 | 0.13 | 11.8 |
| pfu_aug1.0_1385.1_07922.t1 | 5 | 3 | Reo_sigmaC | 308 | 346 | 1.8e-06 | 27.3 | 0.38 | 330.0 | 0.2 |
| pfu_aug1.0_1385.1_07922.t1 | 5 | 3 | IncA | 309 | 389 | 3.5e-06 | 26.7 | 0.0016 | 1.4 | 8.5 |
| pfu_aug1.0_1385.1_07922.t1 | 2 | 2 | Myosin_tail_1 | 309 | 543 | 0.0 | 421.7 | 0.0 | 0.0 | 275.7 |
| pfu_aug1.0_1385.1_07922.t1 | 3 | 2 | Tropomyosin | 310 | 437 | 6.4e-07 | 28.7 | 3.2e-09 | 2.8e-06 | 26.6 |
| pfu_aug1.0_1385.1_07922.t1 | 3 | 3 | Filament | 311 | 541 | 6.1e-09 | 35.7 | 1.1e-05 | 0.0097 | 15.4 |
| pfu_aug1.0_1385.1_07922.t1 | 5 | 4 | Reo_sigmaC | 355 | 427 | 1.8e-06 | 27.3 | 0.0087 | 7.6 | 5.6 |
| pfu_aug1.0_1385.1_07922.t1 | 5 | 4 | IncA | 396 | 458 | 3.5e-06 | 26.7 | 0.019 | 16.0 | 4.9 |
| pfu_aug1.0_1385.1_07922.t1 | 3 | 3 | Tropomyosin | 447 | 541 | 6.4e-07 | 28.7 | 0.0027 | 2.4 | 7.1 |
| pfu_aug1.0_1385.1_07922.t1 | 5 | 5 | Reo_sigmaC | 450 | 539 | 1.8e-06 | 27.3 | 1.8e-05 | 0.015 | 14.4 |
| pfu_aug1.0_1385.1_07922.t1 | 5 | 5 | IncA | 468 | 542 | 3.5e-06 | 26.7 | 3.3e-05 | 0.029 | 13.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1385.1_07922.t1 | gi|42559342|sp|O96064.1|MYSP_MYTGA | Paramyosin [Mytilus galloprovincialis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 2 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1385.1_07922.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1385.1_07922.t1 atgttgatttctgagacgcggaagccccagcgccttggaaacaatcgtctgccacggcacgtgaagatgagagatagaca acacgcgcgctgttgtcggctgctacctatatttgtacagacgatcaaggaaagtggaaatataacaccgctgtacttac ctgccttaacaaacagacttcagtggcgtaaattgagtgtgagaatccaggaattagaagatcttctagaacagcagaga attagatgtagcaaccttgagaaagccaaatccaaactcacagctgaactcaaggaagtcaccatcgaactcgaaaactg ccagatcatcatccaagatctcactaagaggaacaggcagcttgagaacgagaacgccaacctacagaagagagttgatg aactatctgctgagaatgccggtctccgtgctgataaggcagctctagaacaggagaaccacaggctgaaggtctccaac gctgaactgatggagaagaacgacaacctccagagagaaaacaacaacctcaatgcccaacttcgtgaggccaaccaagc tctgaaggatgccaacagacagatcaacgaactcagcgcagctaaggccgcccttgaggccgagcgtgacgcccttgctt cagccctccgtgacaccgaggatgccctcaaggacgcagaaaacaaacttgccgccgcccaggctgctcttaaccagctc agagccgaaatggaacagagactacgtgaaaaggatgaagaaattgacgccatcaggtgttttggaacgtcacgatcaaa actgacgtgttttaatgattcaagaagtcgccatcactttacaatggctgcagataaacctatagtgaaatccgctaacg cctatcgtaaggtgtatgatttttgtgaaaataccgctaccggtactgacttggaaactgctcttgaagagacccagcgc cagttggacgacgcccgtggtcaactctccatctcagaaaggaaacgtatcaccctccaacaagaactcgaagattgccg ctctctgctcgaggccgctgagagagcacgcaagaacgccgaaaatgaattgggagaaacatccgcacgtctcaccgaag tccagctccaagttaccgtcctcacaaacgacaaacgccgcatggaagccgacatcgccgccatgcagagcgaccttgat gacgcactcaacgcccagagagccgccgaggaacgcgccgaccgtctccaagccgaggtcaaccgccttgccggagaact ccaccaggaacaagaaaactacaagaatgcagagggactccgaaagcagctggaaatcgaaatccgcgaaatcaccgtaa ggttagaggaggccgaagctttcgccacaagggaaggaaagagacagatcgccaaattacaggccagaatccgcgacttg gaagccgaattagaagcagaacagagacgtctgagggagaccgccgccaacatgcgtaaatacgaacgtcaatacaaaga aatccagacccaggccgatgacgaccgccgccaggtggccgaactgaccagtctcgtcgaccaactgaccatcaaaatca agacatacaaacgccagatcgaggaggcg |
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Protein
| Protein ID | pfu_aug1.0_1385.1_07922.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1385.1_07922.t1 MLISETRKPQRLGNNRLPRHVKMRDRQHARCCRLLPIFVQTIKESGNITPLYLPALTNRLQWRKLSVRIQELEDLLEQQR IRCSNLEKAKSKLTAELKEVTIELENCQIIIQDLTKRNRQLENENANLQKRVDELSAENAGLRADKAALEQENHRLKVSN AELMEKNDNLQRENNNLNAQLREANQALKDANRQINELSAAKAALEAERDALASALRDTEDALKDAENKLAAAQAALNQL RAEMEQRLREKDEEIDAIRCFGTSRSKLTCFNDSRSRHHFTMAADKPIVKSANAYRKVYDFCENTATGTDLETALEETQR QLDDARGQLSISERKRITLQQELEDCRSLLEAAERARKNAENELGETSARLTEVQLQVTVLTNDKRRMEADIAAMQSDLD DALNAQRAAEERADRLQAEVNRLAGELHQEQENYKNAEGLRKQLEIEIREITVRLEEAEAFATREGKRQIAKLQARIRDL EAELEAEQRRLRETAANMRKYERQYKEIQTQADDDRRQVAELTSLVDQLTIKIKTYKRQIEEA |
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