Gene
| Gene Model ID | pfu_aug1.0_1386.1_29708 |
|---|---|
| Locus | scaffold1386.1 : 49726 ... 78836 : + |
| To GenomeBrowser | scaffold1386.1:49726..78836 |
| Genes list of scaffold | scaffold1386.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1386.1_29708.t1 | 2 | 1 | Ig_3 | 30 | 109 | 1.0e-15 | 57.9 | 1.8e-09 | 3.9e-06 | 27.2 |
| pfu_aug1.0_1386.1_29708.t1 | 2 | 1 | I-set | 31 | 122 | 1.2e-27 | 95.6 | 2.4e-17 | 5.1e-14 | 51.8 |
| pfu_aug1.0_1386.1_29708.t1 | 2 | 1 | Ig_2 | 31 | 116 | 5.4e-18 | 64.8 | 8.2e-10 | 1.7e-06 | 28.0 |
| pfu_aug1.0_1386.1_29708.t1 | 2 | 1 | V-set | 37 | 69 | 3.0e-08 | 33.5 | 0.0021 | 4.4 | 7.2 |
| pfu_aug1.0_1386.1_29708.t1 | 2 | 1 | C2-set_2 | 42 | 109 | 3.7e-08 | 33.1 | 5.2e-08 | 0.00011 | 22.0 |
| pfu_aug1.0_1386.1_29708.t1 | 2 | 1 | ig | 48 | 99 | 4.6e-08 | 33.0 | 8.1e-07 | 0.0017 | 18.4 |
| pfu_aug1.0_1386.1_29708.t1 | 2 | 2 | I-set | 137 | 216 | 1.2e-27 | 95.6 | 3.2e-14 | 6.7e-11 | 41.8 |
| pfu_aug1.0_1386.1_29708.t1 | 2 | 2 | Ig_2 | 137 | 214 | 5.4e-18 | 64.8 | 5.6e-12 | 1.2e-08 | 34.9 |
| pfu_aug1.0_1386.1_29708.t1 | 2 | 2 | Ig_3 | 137 | 211 | 1.0e-15 | 57.9 | 2.0e-09 | 4.3e-06 | 27.1 |
| pfu_aug1.0_1386.1_29708.t1 | 2 | 2 | C2-set_2 | 137 | 178 | 3.7e-08 | 33.1 | 0.00066 | 1.4 | 8.8 |
| pfu_aug1.0_1386.1_29708.t1 | 2 | 2 | V-set | 145 | 211 | 3.0e-08 | 33.5 | 4.0e-08 | 8.5e-05 | 22.4 |
| pfu_aug1.0_1386.1_29708.t1 | 2 | 2 | ig | 156 | 209 | 4.6e-08 | 33.0 | 0.00037 | 0.77 | 9.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1386.1_29708.t1 | gi|2695657|gb|AAB91461.1| | receptor tyrosine phosphatase [Hirudo medicinalis] | 2.0e-39 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_1386.1_29708.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1386.1_29708.t1 atgaccctgcccttgatatcggccttgtttttggccctggtcagtctgcccggggccttggccaaagataatcagaacgg aggagttccccctgttataacattacctctgagaaaccagaccgttgccgaggagaaagtagtcagttttgtctgtaaag cttcaggaacgcccccaccaaggttctcatgggaaaggaggggcaaaccgctcaacctcaaaaagacccgctaccaaatt cattccatgccccacgggagcgtactgaggatcgaaccagtgagatccaaggacaaggaccaagtgtttgcttgtatcgc caccaacgacataggtcaaccagctcgatcacaggcccatctcagtgtctatccatacaagaaagacaaagactttccac aaggatacccgagaataaccgtcaatcctgtattaaaatcagtagaaaaagacaagaatgctttattagcatgtgaagcc gagggagacaacgtgaagatagaatggtacaaggataaagtaccgcttgatgtcagtaataatggacgattaaatatatt acctggagggacattacaaatccagggaagccaggaatcggacaatggccgttacgagtgtgtggcacaaaatgatgtgg gcgtggactattcctatgccgctatgctgtatgttaaagaagctttaaaagccagaggatcaatttgtgttaacaaatgt aaaatggttcagataatcttcaggccgttggtttctgaaatttcaactcgatttgtagtaggaagtttttactccaagat acatccaagtgttcgaattccttgtgaacgaagaataacttggctgcattttaccatcagacactaa |
|
Protein
| Protein ID | pfu_aug1.0_1386.1_29708.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1386.1_29708.t1 MTLPLISALFLALVSLPGALAKDNQNGGVPPVITLPLRNQTVAEEKVVSFVCKASGTPPPRFSWERRGKPLNLKKTRYQI HSMPHGSVLRIEPVRSKDKDQVFACIATNDIGQPARSQAHLSVYPYKKDKDFPQGYPRITVNPVLKSVEKDKNALLACEA EGDNVKIEWYKDKVPLDVSNNGRLNILPGGTLQIQGSQESDNGRYECVAQNDVGVDYSYAAMLYVKEALKARGSICVNKC KMVQIIFRPLVSEISTRFVVGSFYSKIHPSVRIPCERRITWLHFTIRH |
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