Gene
| Gene Model ID | pfu_aug1.0_1388.1_22566 |
|---|---|
| Locus | scaffold1388.1 : 20870 ... 26715 : - |
| To GenomeBrowser | scaffold1388.1:20870..26715 |
| Genes list of scaffold | scaffold1388.1 |
| Synonym | pfu_aug2.0_545.1_17549 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1388.1_22566.t1 | 2 | 1 | EF-hand_8 | 12 | 39 | 8.7e-13 | 47.6 | 1.0e-06 | 0.0017 | 17.9 |
| pfu_aug1.0_1388.1_22566.t1 | 2 | 1 | EF-hand_1 | 13 | 38 | 6.1e-14 | 50.1 | 7.0e-10 | 1.2e-06 | 27.4 |
| pfu_aug1.0_1388.1_22566.t1 | 2 | 1 | EF-hand_6 | 13 | 40 | 6.7e-11 | 41.1 | 2.7e-10 | 4.4e-07 | 29.2 |
| pfu_aug1.0_1388.1_22566.t1 | 1 | 1 | EF-hand_7 | 14 | 74 | 6.4e-13 | 48.6 | 4.6e-16 | 7.6e-13 | 48.4 |
| pfu_aug1.0_1388.1_22566.t1 | 2 | 2 | EF-hand_8 | 43 | 76 | 8.7e-13 | 47.6 | 3.0e-10 | 5.0e-07 | 29.2 |
| pfu_aug1.0_1388.1_22566.t1 | 2 | 2 | EF-hand_1 | 50 | 76 | 6.1e-14 | 50.1 | 3.5e-08 | 5.8e-05 | 22.1 |
| pfu_aug1.0_1388.1_22566.t1 | 2 | 2 | EF-hand_6 | 55 | 74 | 6.7e-11 | 41.1 | 0.0003 | 0.5 | 10.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1388.1_22566.t1 | gi|334183678|ref|NP_001185330.1| | calmodulin 4 [Arabidopsis thaliana] | 6.0e-13 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 2 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1388.1_22566.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1388.1_22566.t1 atggcaaaaagagtgaaaaaccttagtatggcagacgaactcaatgacgctttccgagtgttcgataaagacaggagagg ttttgtttcaactaatgatttcaaacaagtgttattacaactcggagatcacgtgacgccagaggatgcagaggagatga tcagggaggcagatcaaaataaatacggatatattgaatatgcagaatttattaacgctatggtacataaatga |
|
Protein
| Protein ID | pfu_aug1.0_1388.1_22566.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1388.1_22566.t1 MAKRVKNLSMADELNDAFRVFDKDRRGFVSTNDFKQVLLQLGDHVTPEDAEEMIREADQNKYGYIEYAEFINAMVHK |
|