Gene
| Gene Model ID | pfu_aug1.0_1391.1_07933 |
|---|---|
| Locus | scaffold1391.1 : 39403 ... 56575 : - |
| To GenomeBrowser | scaffold1391.1:39403..56575 |
| Genes list of scaffold | scaffold1391.1 |
| Synonym | pfu_aug2.0_2576.1_22114 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1391.1_07933.t1 | 1 | 1 | Peptidase_S24 | 54 | 105 | 3.8e-10 | 39.2 | 8.3e-14 | 6.1e-10 | 38.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1391.1_07933.t1 | gi|260792617|ref|XP_002591311.1| | hypothetical protein BRAFLDRAFT_76762 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| egg-Dshape | 2 |
| trochophore | 2 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1391.1_07933.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1391.1_07933.t1 atgggtttgttggacttcgattttctcgacgatgttcgacggatgaacaaaagacagctgtattaccaagtactgaattt tggaatgattgtgtcgtcagctctgatgatatggaagggtctaatggtagtgacaggcagtgagagtcccattgtggttg ttctcagtggtagtatggagccagcatttcatagaggagatttattattcctgactaactatgtagaggaaccaatcaga gtcggagaaattgttgtcttcaaagtggaagggagggatataccaatagtccaccgtgtattaaaggttcatgaaaaaga ggatggcactgtaaagttcctgacaaagggagataacaattctgtagatgatagaggattatatgcccctggacagctat ggctggagaagaaagatgttgttggcagagctagaggatttgtaccttatgttggaattgtaaccatattgatgaatgat tatcccaaatttaagtatgcaatattagcgtgtcttggattatttgtgttaatacatcgagagtag |
|
Protein
| Protein ID | pfu_aug1.0_1391.1_07933.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1391.1_07933.t1 MGLLDFDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNYVEEPIR VGEIVVFKVEGRDIPIVHRVLKVHEKEDGTVKFLTKGDNNSVDDRGLYAPGQLWLEKKDVVGRARGFVPYVGIVTILMND YPKFKYAILACLGLFVLIHRE |
|