Gene
| Gene Model ID | pfu_aug1.0_1393.1_29711 |
|---|---|
| Locus | scaffold1393.1 : 11566 ... 28473 : + |
| To GenomeBrowser | scaffold1393.1:11566..28473 |
| Genes list of scaffold | scaffold1393.1 |
| Synonym | pfu_aug2.0_54.1_13490 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1393.1_29711.t1 | 3 | 1 | Ank | 1 | 12 | 1.9e-09 | 36.8 | 0.034 | 85.0 | 3.2 |
| pfu_aug1.0_1393.1_29711.t1 | 2 | 1 | Ank_2 | 2 | 40 | 5.5e-11 | 42.6 | 1.5e-06 | 0.0037 | 17.5 |
| pfu_aug1.0_1393.1_29711.t1 | 2 | 1 | Ank_5 | 2 | 54 | 1.4e-09 | 37.8 | 4.9e-06 | 0.012 | 15.8 |
| pfu_aug1.0_1393.1_29711.t1 | 3 | 1 | Ank_4 | 2 | 37 | 4.1e-09 | 36.6 | 1.5e-05 | 0.037 | 14.5 |
| pfu_aug1.0_1393.1_29711.t1 | 3 | 2 | Ank_4 | 17 | 74 | 4.1e-09 | 36.6 | 6.5e-10 | 1.6e-06 | 28.4 |
| pfu_aug1.0_1393.1_29711.t1 | 3 | 2 | Ank | 18 | 38 | 1.9e-09 | 36.8 | 2.2e-05 | 0.054 | 13.3 |
| pfu_aug1.0_1393.1_29711.t1 | 2 | 1 | Ank_3 | 18 | 39 | 6.0e-08 | 32.1 | 0.00021 | 0.51 | 10.7 |
| pfu_aug1.0_1393.1_29711.t1 | 2 | 2 | Ank_2 | 21 | 91 | 5.5e-11 | 42.6 | 7.9e-11 | 2.0e-07 | 31.2 |
| pfu_aug1.0_1393.1_29711.t1 | 2 | 2 | Ank_5 | 54 | 93 | 1.4e-09 | 37.8 | 1.4e-07 | 0.00035 | 20.7 |
| pfu_aug1.0_1393.1_29711.t1 | 2 | 2 | Ank_3 | 57 | 79 | 6.0e-08 | 32.1 | 6.9e-07 | 0.0017 | 18.4 |
| pfu_aug1.0_1393.1_29711.t1 | 3 | 3 | Ank | 58 | 85 | 1.9e-09 | 36.8 | 1.5e-06 | 0.0037 | 16.9 |
| pfu_aug1.0_1393.1_29711.t1 | 3 | 3 | Ank_4 | 58 | 92 | 4.1e-09 | 36.6 | 0.00037 | 0.92 | 10.1 |
| pfu_aug1.0_1393.1_29711.t1 | 3 | 1 | CAP_GLY | 148 | 212 | 0.0 | 233.1 | 1.1e-24 | 2.7e-21 | 75.0 |
| pfu_aug1.0_1393.1_29711.t1 | 3 | 2 | CAP_GLY | 266 | 330 | 0.0 | 233.1 | 3.7e-27 | 9.1e-24 | 82.9 |
| pfu_aug1.0_1393.1_29711.t1 | 3 | 3 | CAP_GLY | 411 | 473 | 0.0 | 233.1 | 1.9e-25 | 4.6e-22 | 77.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1393.1_29711.t1 | gi|291239520|ref|XP_002739671.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1393.1_29711.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1393.1_29711.t1 atgctgctctccaaaggttccgatccaaacatacggtgccgatggacaaacatgacggctctccattatgccgcttattt cgatgttgtacctgtgataaaagtcctactcaaagctactaaagcgtacgatattgacagtacgtgtacggagtttgaca acggttcgtccctacacatagcagcttctaatctggcatacgaggctgttaaagtccttcttcagagtggtgccaatgct ttactcaaagacgaccaggatagaactgctttagaatgcataccagaccctacaaacttagactcagatccagagatggg gaaaattgtcttcaaactaaggaaaacacttcaggaggcgtgtcagccaacgcccaaagtccctccccctaattatgacc ttgtacaaagtaaagtcacattgcaggcaatgggattaacactgggagacaaggttttagttggaggaattaagactggc acactgagatactgtggtccggcagagtttgccgctggattgtgggccggcattgagttggacgaaccaagtggaagaaa cgatggtagtattggaggaatatcatatttccagtgtcctcgtaatcatggtatatttgctccagtgagtaagatagcta agccagggtcaggtcctgtgagcagaccagattcaatgtcaccacacaaaccattacagaaagcctcatcagtagatgtg tcaaatgtcaaggccagagtcgatacaggtctgaaaggtcgagcaccatcgattacagacctggctgatatagaggttgg agatagagtgattgtggccggtcagaggaaaggtaccgtacaattctgtggagataccaagtttgctccaggtatttggt acggtatagagttggatcgtcctgccggcaagaacgatgggtctgtgaacaatgaacgttactttatatgtaaaccaaaa catggtgtattcgctccagtgtctaggatacaaaagcttggagatcgaaggttcagttcaaatgagtctttagatgccat cagttggggcgcagtgtcagaaaaagttgacaggaaatcagtggcccctacaaatactaacacacctgtaagggccagga ctcctaacaaaagaccaaagagtacaggccagtctgtttctcggaccccagtctcaggacagtccatatcaaggacccca ggctcaagctcaaactttaaactcgaagtcggaatgagtgttttctgcaacaacgagttaggtgtagttcggtacattgg accagcagattttggtgaaggtgtgtgggtaggtgtagaactaagaactcctaaagggaaaaatgatggaagtgtacaag acaaacgatactttacgtgtaaacctgatcatggactattggtcagacccagtaaaattaccgtgcgcggaatcaatggt gctaaactcataaatgactactacggctcaaaggacagcgggggaagtaacgaggacattaaaatggatacaaggtag |
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Protein
| Protein ID | pfu_aug1.0_1393.1_29711.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1393.1_29711.t1 MLLSKGSDPNIRCRWTNMTALHYAAYFDVVPVIKVLLKATKAYDIDSTCTEFDNGSSLHIAASNLAYEAVKVLLQSGANA LLKDDQDRTALECIPDPTNLDSDPEMGKIVFKLRKTLQEACQPTPKVPPPNYDLVQSKVTLQAMGLTLGDKVLVGGIKTG TLRYCGPAEFAAGLWAGIELDEPSGRNDGSIGGISYFQCPRNHGIFAPVSKIAKPGSGPVSRPDSMSPHKPLQKASSVDV SNVKARVDTGLKGRAPSITDLADIEVGDRVIVAGQRKGTVQFCGDTKFAPGIWYGIELDRPAGKNDGSVNNERYFICKPK HGVFAPVSRIQKLGDRRFSSNESLDAISWGAVSEKVDRKSVAPTNTNTPVRARTPNKRPKSTGQSVSRTPVSGQSISRTP GSSSNFKLEVGMSVFCNNELGVVRYIGPADFGEGVWVGVELRTPKGKNDGSVQDKRYFTCKPDHGLLVRPSKITVRGING AKLINDYYGSKDSGGSNEDIKMDTR |
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