Gene
| Gene Model ID | pfu_aug1.0_1397.1_44008 |
|---|---|
| Locus | scaffold1397.1 : 1 ... 5167 : + |
| To GenomeBrowser | scaffold1397.1:1..5167 |
| Genes list of scaffold | scaffold1397.1 |
| Synonym | NA |
Manual annotation
| Study field | other |
|---|---|
| Gene name | calmodulin B |
| Description | Blast best hit to DDBJ AY341376 (Pinctada fucata) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1397.1_44008.t1 | 2 | 1 | EFhand_Ca_insen | 2 | 70 | 2.8e-06 | 27.2 | 0.16 | 100.0 | 2.9 |
| pfu_aug1.0_1397.1_44008.t1 | 2 | 1 | EF-hand_4 | 3 | 72 | 7.1e-10 | 38.5 | 1.7e-05 | 0.011 | 15.4 |
| pfu_aug1.0_1397.1_44008.t1 | 4 | 1 | EF-hand_1 | 11 | 39 | 2.7003e-42 | 138.8 | 2.5e-12 | 1.6e-09 | 36.3 |
| pfu_aug1.0_1397.1_44008.t1 | 4 | 1 | EF-hand_6 | 11 | 40 | 1.0e-30 | 102.8 | 1.8e-12 | 1.2e-09 | 37.2 |
| pfu_aug1.0_1397.1_44008.t1 | 4 | 1 | EF-hand_8 | 12 | 37 | 1.8e-34 | 117.1 | 0.0001 | 0.067 | 12.8 |
| pfu_aug1.0_1397.1_44008.t1 | 2 | 1 | EF-hand_7 | 13 | 72 | 6.2e-38 | 128.7 | 3.6e-18 | 2.4e-15 | 56.4 |
| pfu_aug1.0_1397.1_44008.t1 | 4 | 1 | EF-hand_5 | 13 | 36 | 2.2e-27 | 93.1 | 1.3e-09 | 8.2e-07 | 28.0 |
| pfu_aug1.0_1397.1_44008.t1 | 2 | 1 | EF-hand_9 | 15 | 74 | 4.8e-15 | 55.2 | 3.3e-11 | 2.1e-08 | 33.9 |
| pfu_aug1.0_1397.1_44008.t1 | 2 | 1 | SPARC_Ca_bdg | 15 | 69 | 3.8e-08 | 33.3 | 3.6e-05 | 0.023 | 14.7 |
| pfu_aug1.0_1397.1_44008.t1 | 4 | 2 | EF-hand_8 | 24 | 74 | 1.8e-34 | 117.1 | 2.9e-16 | 1.9e-13 | 49.7 |
| pfu_aug1.0_1397.1_44008.t1 | 3 | 1 | UPF0154 | 27 | 56 | 1.3e-06 | 27.9 | 0.00077 | 0.5 | 10.0 |
| pfu_aug1.0_1397.1_44008.t1 | 4 | 2 | EF-hand_1 | 47 | 74 | 2.7003e-42 | 138.8 | 7.0e-12 | 4.5e-09 | 34.9 |
| pfu_aug1.0_1397.1_44008.t1 | 4 | 2 | EF-hand_6 | 48 | 73 | 1.0e-30 | 102.8 | 9.8e-06 | 0.0063 | 16.2 |
| pfu_aug1.0_1397.1_44008.t1 | 4 | 2 | EF-hand_5 | 48 | 72 | 2.2e-27 | 93.1 | 2.5e-07 | 0.00016 | 20.8 |
| pfu_aug1.0_1397.1_44008.t1 | 3 | 2 | UPF0154 | 69 | 92 | 1.3e-06 | 27.9 | 0.13 | 87.0 | 2.8 |
| pfu_aug1.0_1397.1_44008.t1 | 2 | 2 | EFhand_Ca_insen | 78 | 143 | 2.8e-06 | 27.2 | 8.0e-08 | 5.2e-05 | 23.1 |
| pfu_aug1.0_1397.1_44008.t1 | 2 | 2 | SPARC_Ca_bdg | 79 | 143 | 3.8e-08 | 33.3 | 6.1e-06 | 0.0039 | 17.1 |
| pfu_aug1.0_1397.1_44008.t1 | 4 | 3 | EF-hand_8 | 81 | 101 | 1.8e-34 | 117.1 | 3.0e-05 | 0.019 | 14.5 |
| pfu_aug1.0_1397.1_44008.t1 | 2 | 2 | EF-hand_4 | 83 | 145 | 7.1e-10 | 38.5 | 2.0e-07 | 0.00013 | 21.6 |
| pfu_aug1.0_1397.1_44008.t1 | 4 | 3 | EF-hand_1 | 84 | 112 | 2.7003e-42 | 138.8 | 7.2e-13 | 4.6e-10 | 38.0 |
| pfu_aug1.0_1397.1_44008.t1 | 4 | 3 | EF-hand_6 | 84 | 113 | 1.0e-30 | 102.8 | 2.5e-12 | 1.6e-09 | 36.8 |
| pfu_aug1.0_1397.1_44008.t1 | 2 | 2 | EF-hand_7 | 85 | 145 | 6.2e-38 | 128.7 | 8.9e-24 | 5.7e-21 | 74.4 |
| pfu_aug1.0_1397.1_44008.t1 | 4 | 3 | EF-hand_5 | 85 | 109 | 2.2e-27 | 93.1 | 3.2e-10 | 2.1e-07 | 29.9 |
| pfu_aug1.0_1397.1_44008.t1 | 2 | 2 | EF-hand_9 | 88 | 146 | 4.8e-15 | 55.2 | 8.6e-07 | 0.00055 | 19.7 |
| pfu_aug1.0_1397.1_44008.t1 | 4 | 4 | EF-hand_8 | 97 | 146 | 1.8e-34 | 117.1 | 1.1e-19 | 6.9e-17 | 60.8 |
| pfu_aug1.0_1397.1_44008.t1 | 3 | 3 | UPF0154 | 100 | 128 | 1.3e-06 | 27.9 | 0.00029 | 0.19 | 11.3 |
| pfu_aug1.0_1397.1_44008.t1 | 4 | 4 | EF-hand_1 | 120 | 147 | 2.7003e-42 | 138.8 | 2.4e-12 | 1.5e-09 | 36.4 |
| pfu_aug1.0_1397.1_44008.t1 | 4 | 4 | EF-hand_5 | 124 | 145 | 2.2e-27 | 93.1 | 2.8e-06 | 0.0018 | 17.5 |
| pfu_aug1.0_1397.1_44008.t1 | 4 | 4 | EF-hand_6 | 126 | 146 | 1.0e-30 | 102.8 | 2.8e-05 | 0.018 | 14.8 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1397.1_44008.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1397.1_44008.t1 gccgatcagctaacagaggaacagattgcagaatttaaagaggcgttcagcttatttgacaaggatggcgatggtacgat aacaaccaaggagctcggtactgtaatgaggtcactaggtcaaaacccaaccgaggcagaacttcaggatatgatcaacg aagtagacgccgatggaaatggaacgatcgacttcccagaattccttactatgatggcgagaaagatgaaagacaccgac tcggaagaggaaattcgagaagcattcagagtgttcgataaagacggtaacggtttcattagtgcagctgaattacgtca tgtgatgacaaatcttggagaaaaactcacagacgaggaggtagacgagatgatacgagaagcagacattgacggtgacg gacaagttaattatgacgaattcgttaaaatgatgacacagaagtga |
|
Protein
| Protein ID | pfu_aug1.0_1397.1_44008.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1397.1_44008.t1 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYDEFVKMMTQK |
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