Gene
| Gene Model ID | pfu_aug1.0_1397.1_44009 |
|---|---|
| Locus | scaffold1397.1 : 7536 ... 16196 : + |
| To GenomeBrowser | scaffold1397.1:7536..16196 |
| Genes list of scaffold | scaffold1397.1 |
| Synonym | NA |
Manual annotation
| Study field | other |
|---|---|
| Gene name | calmodulin A |
| Description | Blast best hit to DDBJ AY341376 (Pinctada fucata) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1397.1_44009.t1 | 2 | 1 | EFhand_Ca_insen | 26 | 94 | 3.8e-06 | 26.7 | 0.2 | 140.0 | 2.5 |
| pfu_aug1.0_1397.1_44009.t1 | 2 | 1 | EF-hand_4 | 27 | 96 | 2.7e-10 | 39.9 | 1.6e-05 | 0.011 | 15.4 |
| pfu_aug1.0_1397.1_44009.t1 | 4 | 1 | EF-hand_1 | 35 | 63 | 8.00001e-42 | 137.3 | 3.7e-12 | 2.6e-09 | 35.6 |
| pfu_aug1.0_1397.1_44009.t1 | 4 | 1 | EF-hand_6 | 35 | 64 | 8.1e-30 | 99.9 | 3.0e-12 | 2.1e-09 | 36.4 |
| pfu_aug1.0_1397.1_44009.t1 | 4 | 1 | EF-hand_8 | 36 | 61 | 3.3e-33 | 113.0 | 3.6e-05 | 0.026 | 14.1 |
| pfu_aug1.0_1397.1_44009.t1 | 2 | 1 | EF-hand_7 | 37 | 96 | 5.5e-38 | 128.9 | 3.0e-18 | 2.1e-15 | 56.6 |
| pfu_aug1.0_1397.1_44009.t1 | 4 | 1 | EF-hand_5 | 37 | 60 | 6.4e-28 | 94.8 | 9.2e-10 | 6.5e-07 | 28.4 |
| pfu_aug1.0_1397.1_44009.t1 | 2 | 1 | SPARC_Ca_bdg | 38 | 93 | 2.4e-08 | 34.0 | 3.0e-05 | 0.021 | 14.8 |
| pfu_aug1.0_1397.1_44009.t1 | 2 | 1 | EF-hand_9 | 39 | 98 | 1.1e-14 | 54.1 | 8.0e-11 | 5.6e-08 | 32.5 |
| pfu_aug1.0_1397.1_44009.t1 | 4 | 2 | EF-hand_8 | 51 | 98 | 3.3e-33 | 113.0 | 1.3e-14 | 9.5e-12 | 44.3 |
| pfu_aug1.0_1397.1_44009.t1 | 3 | 1 | UPF0154 | 51 | 80 | 1.7e-06 | 27.5 | 0.00085 | 0.6 | 9.7 |
| pfu_aug1.0_1397.1_44009.t1 | 4 | 2 | EF-hand_1 | 71 | 98 | 8.00001e-42 | 137.3 | 8.2e-12 | 5.8e-09 | 34.6 |
| pfu_aug1.0_1397.1_44009.t1 | 4 | 2 | EF-hand_6 | 72 | 97 | 8.1e-30 | 99.9 | 1.2e-05 | 0.0083 | 15.9 |
| pfu_aug1.0_1397.1_44009.t1 | 4 | 2 | EF-hand_5 | 72 | 96 | 6.4e-28 | 94.8 | 2.9e-07 | 0.0002 | 20.5 |
| pfu_aug1.0_1397.1_44009.t1 | 3 | 2 | UPF0154 | 93 | 116 | 1.7e-06 | 27.5 | 0.076 | 54.0 | 3.5 |
| pfu_aug1.0_1397.1_44009.t1 | 2 | 2 | EFhand_Ca_insen | 102 | 170 | 3.8e-06 | 26.7 | 5.7e-08 | 4.0e-05 | 23.4 |
| pfu_aug1.0_1397.1_44009.t1 | 2 | 2 | SPARC_Ca_bdg | 104 | 167 | 2.4e-08 | 34.0 | 4.5e-06 | 0.0032 | 17.4 |
| pfu_aug1.0_1397.1_44009.t1 | 4 | 3 | EF-hand_8 | 105 | 125 | 3.3e-33 | 113.0 | 0.00017 | 0.12 | 11.9 |
| pfu_aug1.0_1397.1_44009.t1 | 2 | 2 | EF-hand_4 | 106 | 169 | 2.7e-10 | 39.9 | 7.5e-08 | 5.3e-05 | 22.9 |
| pfu_aug1.0_1397.1_44009.t1 | 4 | 3 | EF-hand_1 | 108 | 136 | 8.00001e-42 | 137.3 | 6.2e-13 | 4.4e-10 | 38.1 |
| pfu_aug1.0_1397.1_44009.t1 | 4 | 3 | EF-hand_6 | 108 | 137 | 8.1e-30 | 99.9 | 6.1e-12 | 4.3e-09 | 35.4 |
| pfu_aug1.0_1397.1_44009.t1 | 2 | 2 | EF-hand_7 | 109 | 169 | 5.5e-38 | 128.9 | 1.1e-23 | 7.7e-21 | 74.0 |
| pfu_aug1.0_1397.1_44009.t1 | 4 | 3 | EF-hand_5 | 109 | 133 | 6.4e-28 | 94.8 | 2.9e-10 | 2.1e-07 | 29.9 |
| pfu_aug1.0_1397.1_44009.t1 | 2 | 2 | EF-hand_9 | 112 | 171 | 1.1e-14 | 54.1 | 7.4e-07 | 0.00052 | 19.8 |
| pfu_aug1.0_1397.1_44009.t1 | 4 | 4 | EF-hand_8 | 121 | 169 | 3.3e-33 | 113.0 | 3.3e-19 | 2.3e-16 | 59.1 |
| pfu_aug1.0_1397.1_44009.t1 | 3 | 3 | UPF0154 | 124 | 152 | 1.7e-06 | 27.5 | 0.00036 | 0.26 | 10.9 |
| pfu_aug1.0_1397.1_44009.t1 | 4 | 4 | EF-hand_1 | 144 | 171 | 8.00001e-42 | 137.3 | 2.4e-12 | 1.7e-09 | 36.3 |
| pfu_aug1.0_1397.1_44009.t1 | 4 | 4 | EF-hand_5 | 148 | 169 | 6.4e-28 | 94.8 | 1.3e-06 | 0.00089 | 18.4 |
| pfu_aug1.0_1397.1_44009.t1 | 4 | 4 | EF-hand_6 | 150 | 170 | 8.1e-30 | 99.9 | 5.0e-05 | 0.035 | 13.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1397.1_44009.t1 | gi|46517823|gb|AAQ20043.1| | calmodulin [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1397.1_44009.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1397.1_44009.t1 atgaaccatgaaaatatttcccttgtcacagctattcgtacttcatcccctgatattaataggataaaaatggccgatca gctgaccgaggagcagattgcagaattcaaggaagcgttcagtttgtttgacaaggacggcgatggtacaataacaagca aggagctgggtacagtaatgaggtcactgggtcagaatccaaccgaggctgaacttcaggatatgatcaacgaagtagat gctgatggaaacggaaccatcgacttcccagaattccttacaatgatggcgcgaaagatgaaagacaccgactcggaaga ggaaattaaagaagctttcagagtgttcgataaagatggcaatggtttcattagtgcagctgaattacgtcacgtgatga caaatctcggagaaaaacttacggatgaggaagtagacgagatgattcgtgaagctgatattgacggtgacggacaggtt aattatgaagaatttgtgaaaatgatgatgtcgaagtga |
|
Protein
| Protein ID | pfu_aug1.0_1397.1_44009.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1397.1_44009.t1 MNHENISLVTAIRTSSPDINRIKMADQLTEEQIAEFKEAFSLFDKDGDGTITSKELGTVMRSLGQNPTEAELQDMINEVD ADGNGTIDFPEFLTMMARKMKDTDSEEEIKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV NYEEFVKMMMSK |
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