Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_13971.1_10663
Locus scaffold13971.1 : 294 ... 19925 : -
To GenomeBrowser scaffold13971.1:294..19925
Genes list of scaffold scaffold13971.1
Synonym pfu_aug2.0_904.1_14648

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_13971.1_10663.t1 1 1 C1q 230 343 1.2e-06 28.5 4.7e-10 2.3e-06 27.6

Transcript
Transcript IDpfu_aug1.0_13971.1_10663.t1
Definition-
>pfu_aug1.0_13971.1_10663.t1
atgcctagcaagctaggttggaccagtcaggacaaattacgccagaacatgatgttgaatatcacgcgcgtacgttacga
gggccgatatgagggaaaagaaatgtcgacacatttgtatatgtgtctggtatatttcatcttgtacgagtttgtcgggg
caacaattttagataattctgtaaatctagaggatatgaagataacctgtgagacacagttaacgaaaatcattgagacc
tttcatacttttgaggcaaaggtcaccgaaagggttcgtggactcgaagatactgtaaagtctcaaaacgaaaagatttt
tcaacttgaacgagaaatttcaagaaaggacattgtgaacaaaataacaactgatgtctttgaaagattaaacttacaga
atgataagattttttcgcgcgaaaataaggaactggatttgaacgttcctcatccactaaaggaaatcacctataatcaa
agcatcgatttcgtagaaagactgacgagttctgatatggacaacaacagacgcaatggtccgcatagttccgaaatgat
gggaaacgaagcatggaaaaatgcagtgaacaaaactaattcatgggaagtagtacagagaaaattggatatagatcagt
tgaagaaaccattgagaagagctgattccgatattacgtctgatcccttctatgcttacatgagagacgacatgctggaa
ccatcagagcaccatgtgttcgtctacgatattgtgacatcaaatcctggtaataactacaaccgatacaatggtatgta
taccgtgaaggaaactggatactattacatgtctgctacaacaattgtagagggaaatggagtgatcttctttgaaatcg
tcaagaatggggcagtttttgcaacaggattatcaaacagcgctggaatagataattctcataccgggacagtgtcgggc
attgtgtttgcgaatccaaatgatgttatatttgtccgttcacagggtgctaccaatgtcggatcgtctactgggaaaat
caaaagtacaacggagagcagcgcgcgtaggaacagtgatgtcaactttcagataccctctgagtttaccgaaacgttga
ggatgggcatttgcctacagcatgtacaggaaatgaagtgtaaaaaggtcttaccgaacgacattaggaatgacaatgtt
gtttatggggcagtttatttcatacgcacacatcatgtacaacttactgttgcaataaggaaggattacttccattgtat
gcaattgtttgttggtgtggtagtgaaattcctttttctgatactctatgtatgcatcaatagtcaagaatccttaattc
tctcatcatatcgagttaaagaagatcctgacgataatataaacagcactcacaatagagcaccatatcgagcatcgacg
gacccctag

Protein
Protein IDpfu_aug1.0_13971.1_10663.t1
Definition-
>pfu_aug1.0_13971.1_10663.t1
MPSKLGWTSQDKLRQNMMLNITRVRYEGRYEGKEMSTHLYMCLVYFILYEFVGATILDNSVNLEDMKITCETQLTKIIET
FHTFEAKVTERVRGLEDTVKSQNEKIFQLEREISRKDIVNKITTDVFERLNLQNDKIFSRENKELDLNVPHPLKEITYNQ
SIDFVERLTSSDMDNNRRNGPHSSEMMGNEAWKNAVNKTNSWEVVQRKLDIDQLKKPLRRADSDITSDPFYAYMRDDMLE
PSEHHVFVYDIVTSNPGNNYNRYNGMYTVKETGYYYMSATTIVEGNGVIFFEIVKNGAVFATGLSNSAGIDNSHTGTVSG
IVFANPNDVIFVRSQGATNVGSSTGKIKSTTESSARRNSDVNFQIPSEFTETLRMGICLQHVQEMKCKKVLPNDIRNDNV
VYGAVYFIRTHHVQLTVAIRKDYFHCMQLFVGVVVKFLFLILYVCINSQESLILSSYRVKEDPDDNINSTHNRAPYRAST
DP

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495