Gene
| Gene Model ID | pfu_aug1.0_14000.1_18071 |
|---|---|
| Locus | scaffold14000.1 : 2938 ... 19685 : - |
| To GenomeBrowser | scaffold14000.1:2938..19685 |
| Genes list of scaffold | scaffold14000.1 |
| Synonym | pfu_aug2.0_1491.1_05085 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_14000.1_18071.t1 | 2 | 1 | Nup54 | 73 | 90 | 4.6e-16 | 58.7 | 0.096 | 1400.0 | -1.2 |
| pfu_aug1.0_14000.1_18071.t1 | 2 | 2 | Nup54 | 269 | 321 | 4.6e-16 | 58.7 | 3.1e-20 | 4.6e-16 | 58.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_14000.1_18071.t1 | gi|291223056|ref|XP_002731520.1| | PREDICTED: nucleoporin p54-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_14000.1_18071.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14000.1_18071.t1 atgactcggatgtcaatggtggaaggatttggtggatttggcactcaacccaaaacaacagcatcaacaggatttggatt tacaggttttggagggtttggcactcagcctaaaaccaccgcagcaggaacaacagggcttggatttggtacaggaacaa gtacagggaccacgggatttggatttggagcaggaacaagtggcaccacaacagctcagcaacagcagcaacaacaacaa caagccagctccaccctcgaaaacctcggcacggccgttactctaccacagatatatggtgatgagagggacgctatcat agccaagtggaaccagttactggcttactggggtactggtaaaggttactatagtcagaatggagcggtagatttcacct cagaaaatccatactgcagatttaaggctgttggatacacaaggctgcctagaactaagaacgaggatggccttgtgtct atatttatcaacaagaaggaaagtgacgtgacgaccaatcaacaacaaatacaagacacgctcttcaagatcatggggag tagaccacagttctcagtgtgtgtggagggcatcaagagacttccagatgacaagacagaactggtaatatatatcctgg aaagacccgctacaggcccagcacggagggtacccgccagcgacacgtttaacttcctcaatcagccggcacagcaaggc cagctaaaaacacagctagatgtacagagtgtgatacctaagacgggactcactgatcaggcactgaaggaatacctgga tacacctcctgctggaattcatccattgctatggcaacaagcaaaggtagataatccagatcccagcaaccttataccca ttcctatgataggatttaaagcccttcatgaaaggatgaagcaccaagaacaacagaccaaggcacatcaacaaagactg gatgaccctggggacctgccggacactcacaccctgtctctgtaa |
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Protein
| Protein ID | pfu_aug1.0_14000.1_18071.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14000.1_18071.t1 MTRMSMVEGFGGFGTQPKTTASTGFGFTGFGGFGTQPKTTAAGTTGLGFGTGTSTGTTGFGFGAGTSGTTTAQQQQQQQQ QASSTLENLGTAVTLPQIYGDERDAIIAKWNQLLAYWGTGKGYYSQNGAVDFTSENPYCRFKAVGYTRLPRTKNEDGLVS IFINKKESDVTTNQQQIQDTLFKIMGSRPQFSVCVEGIKRLPDDKTELVIYILERPATGPARRVPASDTFNFLNQPAQQG QLKTQLDVQSVIPKTGLTDQALKEYLDTPPAGIHPLLWQQAKVDNPDPSNLIPIPMIGFKALHERMKHQEQQTKAHQQRL DDPGDLPDTHTLSL |
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