Gene
| Gene Model ID | pfu_aug1.0_14053.1_61296 |
|---|---|
| Locus | scaffold14053.1 : 24 ... 10881 : + |
| To GenomeBrowser | scaffold14053.1:24..10881 |
| Genes list of scaffold | scaffold14053.1 |
| Synonym | pfu_aug2.0_2561.1_05582 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_14053.1_61296.t1 | 5 | 1 | Ank_5 | 126 | 154 | 7.3e-14 | 51.4 | 0.12 | 250.0 | 2.1 |
| pfu_aug1.0_14053.1_61296.t1 | 3 | 1 | Ank_2 | 129 | 180 | 1.4e-17 | 63.8 | 0.0047 | 10.0 | 6.5 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 1 | Ank_4 | 130 | 154 | 4.5e-17 | 62.0 | 0.019 | 41.0 | 4.8 |
| pfu_aug1.0_14053.1_61296.t1 | 3 | 2 | Ank_2 | 247 | 304 | 1.4e-17 | 63.8 | 2.6e-06 | 0.0055 | 17.0 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 2 | Ank_5 | 247 | 269 | 7.3e-14 | 51.4 | 0.14 | 300.0 | 1.8 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 1 | Ank_3 | 248 | 271 | 3.5e-13 | 48.4 | 0.0019 | 3.9 | 7.9 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 2 | Ank_4 | 250 | 303 | 4.5e-17 | 62.0 | 4.1e-07 | 0.00086 | 19.7 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 1 | Ank | 250 | 269 | 6.1e-14 | 51.0 | 0.093 | 200.0 | 2.0 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 3 | Ank_5 | 281 | 326 | 7.3e-14 | 51.4 | 3.2e-07 | 0.00067 | 19.8 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 2 | Ank_3 | 287 | 306 | 3.5e-13 | 48.4 | 0.0003 | 0.64 | 10.4 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 2 | Ank | 289 | 304 | 6.1e-14 | 51.0 | 0.0013 | 2.7 | 7.9 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 3 | Ank_4 | 309 | 336 | 4.5e-17 | 62.0 | 0.00014 | 0.29 | 11.6 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 4 | Ank_5 | 316 | 339 | 7.3e-14 | 51.4 | 0.01 | 22.0 | 5.4 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 3 | Ank | 319 | 340 | 6.1e-14 | 51.0 | 8.9e-05 | 0.19 | 11.6 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 3 | Ank_3 | 319 | 340 | 3.5e-13 | 48.4 | 0.00011 | 0.23 | 11.8 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 4 | Ank_4 | 321 | 378 | 4.5e-17 | 62.0 | 1.1e-08 | 2.4e-05 | 24.6 |
| pfu_aug1.0_14053.1_61296.t1 | 3 | 3 | Ank_2 | 324 | 399 | 1.4e-17 | 63.8 | 5.5e-12 | 1.2e-08 | 35.2 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 5 | Ank_5 | 349 | 396 | 7.3e-14 | 51.4 | 2.8e-08 | 5.9e-05 | 23.1 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 4 | Ank | 358 | 388 | 6.1e-14 | 51.0 | 4.0e-07 | 0.00085 | 19.0 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 4 | Ank_3 | 358 | 378 | 3.5e-13 | 48.4 | 0.0025 | 5.3 | 7.5 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 5 | Ank_4 | 373 | 398 | 4.5e-17 | 62.0 | 0.0086 | 18.0 | 5.9 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 5 | Ank | 390 | 397 | 6.1e-14 | 51.0 | 0.062 | 130.0 | 2.6 |
| pfu_aug1.0_14053.1_61296.t1 | 5 | 5 | Ank_3 | 390 | 399 | 3.5e-13 | 48.4 | 0.24 | 510.0 | 1.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_14053.1_61296.t1 | gi|327283751|ref|XP_003226604.1| | PREDICTED: transient receptor potential cation channel subfamily V member 5 [Anolis carolinensis] | 1.0e-19 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_14053.1_61296.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14053.1_61296.t1 atggatgaggttcccctttatctcctcgggagaaagcgtcgggagtctctccaggacgtcaacgaaccaacgggagaaaa atcagaggatggcgacttcaaacaactggcgaagatccgagaggaatacaaatctggttttcggaaactgagcacgatta cggaatctgatatcaatcccgtcgtcgacaaaggttcactaccggaagcagcaccagggaaaactattgacgggtttcaa cagcaacctttgccatccggaaggccaacaaaactagatgaacatcgatcccaaattttcgaagcagtattggaagatga cgctacaaagttatcgaatgtcgtcgaaacagtcaaaaaatatttcattttatccgatgttatggatcccaacaatggaa tgatgaatgccctgaactttgccatagaacgaggcaaatttgcatcaacaaattatcttattgatgtagcagacgagaat atgctacttcaccagtacactgtgcccgatcttaacacaccaagaacagcacttcaccaacttactatnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnatccaatcagaatgtgttacacttggcagcgcggtccccaaatacgtcaccggaaattgcgcggga gctggtggcatacacgattcaagctcattcctggaatactgtcaacgacgtcgatgggaataaaaataatgctcttcacg tggcagcaaagtatgctaatccagacgttatttgggagttccgtcgtgtttcatttaagatgcagaacaaaaaaggttgt actccatttcaccgtgcggttcgtaaaggtgaaccagatatattagagacaatgctggacatatttgaaaatatgcagag ggcaggtaacataaatgaacagaacttgaaaggggaaactgtgttgcatctggccgtcttagccggatttcacaacacag tgaaacgcctgatctatctacgcggggatcttgaggtaaaggatcggaatggggacacacctcttcaccgattggtcaaa ctgattgtaaaatgccctaatcccgaggaccaaaggcgttgtttggatacactagattcaattatatatgaatgtcctag atggttctgctattcgtctacattcaaagatctgggatacagcttccacagcgaagatgtgaagctgatacaacggtaca ggagacagggattgacctggctcatacacaaaatcacaaacaacgacaacctttccgtgttcactctgtgcttctctgtt ggtgcacatgaaatactcaataaagtgctgactcttaacaccgtcaaatatttcactcacgaaggatatcattacaatga catttccgacattactccgcttacaaatggctctttagcacagaaatattttagtatcgggacaaacaaggtcacaccaa acatttgcggcctggaacttttagcttctgtgaatgacacgacacgtgccgcaaaggttttagacattatcccgatacga tacctcgagaaaatctatggcagactgaatttgatcatctttgcttttctgattgctatacatctgatctacatgttcat cttttcttttgccggaattgaaatttcgaaatcgtttcggaatactacgtacacgttttctccttccggtttgatgacag tggctgtttacgttgttgttcctgtagaacctcttgtccttatcattttctgtgttgtttcatttctctctgccatttgt cgtcgagattacaaaaggccggtgtcttcgatgcttccataccttttctatctttcctactccttcctcgttgtatcgtg gttggtccttgtttccataaacgaccgcttccaagattatgtcctcgcgctatgcttgtgcttcgggtggctatacacca ttgttctcactcgcggtttgaaagggatccactatttctggcgtatgatcaagtacatggttttaaaagatacgttaaga tttctagttgtatatctttgcgttctgttagcattttcgttttccctgcacgttgttttccaaatttcgtccacaatttc tgacacgtatccaaacgttggcgagactatctttcttacattcactataatgcttggtatgggcgaactctttgatgaca acttcagtcaaggtatgtccgacgctgggagagataccacattcgccaaagtacttttcgttgtatacgtcattcttgct gccattattttgctgaacatgttgatagcgatgatgaacgattcttaccgaactgtatctgaggatcaaaagatttcatg gcgaatcgactccattcaattgggcgtgcgtactgaaagactacttccgctaaccagatatttatttagaagccttggtg tcgatttgatggaaattccaggcgaagaaaaaggactaaaagtgaaagagaaagtagtaatgaaatattttctgaaactt cgacgagggactgccacaaagctgttttcaacgtcacacgaggcagccgatcataaggagaaggaactcaacatgatcaa ggaacaaattacaaatttgaatattaaaatgaagtccgttgagacagacatgtcggaaaattcaaagaaacttgataagc ttgtcgcntcatatgaattggaaaatagttaa |
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Protein
| Protein ID | pfu_aug1.0_14053.1_61296.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14053.1_61296.t1 MDEVPLYLLGRKRRESLQDVNEPTGEKSEDGDFKQLAKIREEYKSGFRKLSTITESDINPVVDKGSLPEAAPGKTIDGFQ QQPLPSGRPTKLDEHRSQIFEAVLEDDATKLSNVVETVKKYFILSDVMDPNNGMMNALNFAIERGKFASTNYLIDVADEN MLLHQYTVPDLNTPRTALHQLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXSNQNVLHLAARSPNTSPEIARELVAYTIQAHSWNTVNDVDGNKNNALHVAAKYANPDVIWEFRRVSFKMQNKKGC TPFHRAVRKGEPDILETMLDIFENMQRAGNINEQNLKGETVLHLAVLAGFHNTVKRLIYLRGDLEVKDRNGDTPLHRLVK LIVKCPNPEDQRRCLDTLDSIIYECPRWFCYSSTFKDLGYSFHSEDVKLIQRYRRQGLTWLIHKITNNDNLSVFTLCFSV GAHEILNKVLTLNTVKYFTHEGYHYNDISDITPLTNGSLAQKYFSIGTNKVTPNICGLELLASVNDTTRAAKVLDIIPIR YLEKIYGRLNLIIFAFLIAIHLIYMFIFSFAGIEISKSFRNTTYTFSPSGLMTVAVYVVVPVEPLVLIIFCVVSFLSAIC RRDYKRPVSSMLPYLFYLSYSFLVVSWLVLVSINDRFQDYVLALCLCFGWLYTIVLTRGLKGIHYFWRMIKYMVLKDTLR FLVVYLCVLLAFSFSLHVVFQISSTISDTYPNVGETIFLTFTIMLGMGELFDDNFSQGMSDAGRDTTFAKVLFVVYVILA AIILLNMLIAMMNDSYRTVSEDQKISWRIDSIQLGVRTERLLPLTRYLFRSLGVDLMEIPGEEKGLKVKEKVVMKYFLKL RRGTATKLFSTSHEAADHKEKELNMIKEQITNLNIKMKSVETDMSENSKKLDKLVXSYELENS |
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