Gene
| Gene Model ID | pfu_aug1.0_14142.1_61308 |
|---|---|
| Locus | scaffold14142.1 : 3030 ... 4775 : + |
| To GenomeBrowser | scaffold14142.1:3030..4775 |
| Genes list of scaffold | scaffold14142.1 |
| Synonym | pfu_aug2.0_27.1_23262 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_14142.1_61308.t1 | 2 | 1 | EF-hand_8 | 12 | 37 | 1.0e-16 | 60.2 | 1.1e-07 | 0.00015 | 21.3 |
| pfu_aug1.0_14142.1_61308.t1 | 2 | 1 | EF-hand_1 | 14 | 40 | 3.2e-17 | 60.4 | 2.4e-10 | 3.3e-07 | 29.1 |
| pfu_aug1.0_14142.1_61308.t1 | 2 | 1 | EF-hand_6 | 14 | 41 | 1.8e-13 | 49.0 | 3.0e-11 | 4.1e-08 | 32.4 |
| pfu_aug1.0_14142.1_61308.t1 | 1 | 1 | EF-hand_7 | 15 | 73 | 4.0e-17 | 62.0 | 3.6e-20 | 4.9e-17 | 61.8 |
| pfu_aug1.0_14142.1_61308.t1 | 2 | 1 | EF-hand_5 | 15 | 38 | 3.9e-13 | 48.0 | 2.6e-09 | 3.5e-06 | 26.0 |
| pfu_aug1.0_14142.1_61308.t1 | 2 | 2 | EF-hand_8 | 27 | 74 | 1.0e-16 | 60.2 | 1.0e-14 | 1.4e-11 | 43.8 |
| pfu_aug1.0_14142.1_61308.t1 | 2 | 2 | EF-hand_1 | 50 | 74 | 3.2e-17 | 60.4 | 1.7e-10 | 2.3e-07 | 29.6 |
| pfu_aug1.0_14142.1_61308.t1 | 2 | 2 | EF-hand_5 | 54 | 74 | 3.9e-13 | 48.0 | 1.6e-07 | 0.00022 | 20.4 |
| pfu_aug1.0_14142.1_61308.t1 | 2 | 2 | EF-hand_6 | 57 | 74 | 1.8e-13 | 49.0 | 1.4e-05 | 0.019 | 14.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_14142.1_61308.t1 | gi|90811673|gb|ABD98034.1| | calmodulin [Striga asiatica] | 2.0e-16 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_14142.1_61308.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14142.1_61308.t1 atgatggcgaagaagatgatggagggtgaccttgagaatgagatccgagaagcgttcacgctgtttgatacggacagaag tggttccattactaaagatgaactgtataatgttataatgaatcatggccataagtttactgatgaagaagccaaacagc tgatcagcgaagctgacaaagatggtgatgggagggttaattacgaagagtttttgagtgtggtgtgtccatcagagaga gtaacgacacatctgtga |
|
Protein
| Protein ID | pfu_aug1.0_14142.1_61308.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14142.1_61308.t1 MMAKKMMEGDLENEIREAFTLFDTDRSGSITKDELYNVIMNHGHKFTDEEAKQLISEADKDGDGRVNYEEFLSVVCPSER VTTHL |
|