Gene
Gene Model ID | pfu_aug1.0_14212.1_03459 |
---|---|
Locus | scaffold14212.1 : 36283 ... 62000 : - |
To GenomeBrowser | scaffold14212.1:36283..62000 |
Genes list of scaffold | scaffold14212.1 |
Synonym | NA |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_14212.1_03459.t1 | 3 | 1 | DEAD | 237 | 262 | 2.1e-24 | 85.9 | 5.0e-06 | 0.025 | 14.0 |
pfu_aug1.0_14212.1_03459.t1 | 3 | 2 | DEAD | 265 | 349 | 2.1e-24 | 85.9 | 6.9e-23 | 3.4e-19 | 68.9 |
pfu_aug1.0_14212.1_03459.t1 | 2 | 1 | Helicase_C | 316 | 343 | 1.0e-13 | 50.9 | 0.91 | 4500.0 | -2.5 |
pfu_aug1.0_14212.1_03459.t1 | 3 | 3 | DEAD | 423 | 457 | 2.1e-24 | 85.9 | 0.23 | 1100.0 | -1.1 |
pfu_aug1.0_14212.1_03459.t1 | 2 | 2 | Helicase_C | 423 | 476 | 1.0e-13 | 50.9 | 1.1e-16 | 5.5e-13 | 48.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_14212.1_03459.t1 | gi|189342956|gb|ACD91989.1| | DEAD box polypeptide 27 [Homo sapiens] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
egg-4cell | 1 |
egg-Dshape | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_14212.1_03459.t1 |
---|---|
Definition | - |
>pfu_aug1.0_14212.1_03459.t1 aaaaaatagtgtccgacgtcttcttaaagctgttctttgataaattagagataaatattaagatacgaaaacaatgtaat tccagctatttcgacatcattctctttcgcacgacaggcaacaacatggctcacctgaggaaactcggacttattggaac aattgaagatggcgaagatatcgagattgaaccagagagttctgatagcgaggaagagggaagacaacagggacagactc aaaagaagaaaaagaagaagcctaaaacagatgaattcaaccacaacttttcctttgctgatcagctagatccaagcaaa tcgtttgattttgactttgcattgaaacatgccaagaaaaaacaagcagcaacaacacttgatgaaaaaattgccaagac aaggaggcttaacaaaaagcaagcaaaagaggttgaagctttggggagtgacgaagaagaaatagaggaagatatagatg attcttcagatgaagaaatgagatcagatacaataaaaacaaaagagaagaaacagaaaaagaagaaaaagaaaaagagg aagaaagaagattctgacgaggaagaggagaaagagaaaatagaattttcagaaagcattgatgcagtagatgagaacat ttcctttcaagacatgaatgtctcacgaccactaatgaagggtctgagtcatatgaactttgataaacctacacccatac aatcggcaactattcctgtagcgttactcggcaaagatctgtgtgcgtgtgcagtcactgggtcaggtggattggacata aaggcacaggaggcagctttacgtatgggacctgatgttgtcatagcaacgcctggccgtctgattgatcacctgcaaaa ttctcccgtatttaacctcaataatatagaaattctggtgctagatgaagctgacagaatgttagacgagtattttgctg agcagatgaaggagatcattcgtcagtgttctcgttcacgacagacgatgttgttctcggccaccatgacagaggctgtg caggacttggcagcggtgtcgctcaaaaacccggttaaaatcttcgtaaatgagaatacggatgtggctcttggtttacg acaggagtttatcagggtcagggccaatagggaaggtgatagagaggccattgtttgtgcattagtaagtcggaccttca gagaccactgtattgtgttcatacaaaccaagaaacaggcacatcgtatgcatattgtacttggattgctgggtattaac gtaggggagctacatggaaatctgtcacaggcacagagattggagacgttaaagagatttaagaatgcagagattgatgt tttactggccacggatctggctgcacgtggtctggacattcaaggggtcaaaactttccttatcatggaacgctacaatc gtcgtgcatgtaacatccatgcaaggatgtctagagagaaaattcgacatttaacttga |
Protein
Protein ID | pfu_aug1.0_14212.1_03459.t1 |
---|---|
Definition | - |
>pfu_aug1.0_14212.1_03459.t1 KIVSDVFLKLFFDKLEINIKIRKQCNSSYFDIILFRTTGNNMAHLRKLGLIGTIEDGEDIEIEPESSDSEEEGRQQGQTQ KKKKKKPKTDEFNHNFSFADQLDPSKSFDFDFALKHAKKKQAATTLDEKIAKTRRLNKKQAKEVEALGSDEEEIEEDIDD SSDEEMRSDTIKTKEKKQKKKKKKKRKKEDSDEEEEKEKIEFSESIDAVDENISFQDMNVSRPLMKGLSHMNFDKPTPIQ SATIPVALLGKDLCACAVTGSGGLDIKAQEAALRMGPDVVIATPGRLIDHLQNSPVFNLNNIEILVLDEADRMLDEYFAE QMKEIIRQCSRSRQTMLFSATMTEAVQDLAAVSLKNPVKIFVNENTDVALGLRQEFIRVRANREGDREAIVCALVSRTFR DHCIVFIQTKKQAHRMHIVLGLLGINVGELHGNLSQAQRLETLKRFKNAEIDVLLATDLAARGLDIQGVKTFLIMERYNR RACNIHARMSREKIRHLT |