Gene
Gene Model ID | pfu_aug1.0_14249.1_54044 |
---|---|
Locus | scaffold14249.1 : 6896 ... 27431 : + |
To GenomeBrowser | scaffold14249.1:6896..27431 |
Genes list of scaffold | scaffold14249.1 |
Synonym | NA |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_14249.1_54044.t1 | 2 | 1 | Band_7 | 6 | 81 | 6.4e-09 | 35.9 | 9.0e-08 | 0.00067 | 19.6 |
pfu_aug1.0_14249.1_54044.t1 | 2 | 2 | Band_7 | 111 | 188 | 6.4e-09 | 35.9 | 2.9e-06 | 0.021 | 14.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_14249.1_54044.t1 | gi|260786369|ref|XP_002588230.1| | hypothetical protein BRAFLDRAFT_124696 [Branchiostoma floridae] | 2.0e-28 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 5 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 1 |
mantle | 2 |
Transcript
Transcript ID | pfu_aug1.0_14249.1_54044.t1 |
---|---|
Definition | - |
>pfu_aug1.0_14249.1_54044.t1 atggctttatcagacagaagagcacaggtacaagtatcagcaacaatgcagtactttttaagaaaagaagacctgccatt gctccatagacggtttgacctacagtatgaggacgtagtgatgaaaagtgctgaagatgccttgaagggggaaatcacca agtttacaacaagagaactttacgagaaaagagcagagacggaatccagtatatataaggcggtacgacaaaggctgggg ggtgtatgctgtgccatcaactgtaattcttttcaatatgttggagtcttaagcccggtacacacgtatggctttatcag acagaagagcacgggtacagtcagtttggacgatgtctattctacaggaaagcatttcattggtcctgactttgagttta aagttttccaagccgacgctcacttcttagaactggatagaattagggcattcacatctgatcgcttagaggtacaagta tcggcaacaatgcagtactttttaagaaaagaagacctgccattgctccatagacggttcgacctacagtatgaggacgt agtgatgaaaagtgctgaagatgccctgaagcataataaaggacatacctgtcggtatgtccttgatgtaacacgccgct cgcagacggcgttattttcagagacggtataccatgcctaccaagcctatgtaacccaggtatgcatattaatgacccgg tggttgccaacgtcggccttaaagtgttctgcttttgctatcgaatttctattgaattga |
Protein
Protein ID | pfu_aug1.0_14249.1_54044.t1 |
---|---|
Definition | - |
>pfu_aug1.0_14249.1_54044.t1 MALSDRRAQVQVSATMQYFLRKEDLPLLHRRFDLQYEDVVMKSAEDALKGEITKFTTRELYEKRAETESSIYKAVRQRLG GVCCAINCNSFQYVGVLSPVHTYGFIRQKSTGTVSLDDVYSTGKHFIGPDFEFKVFQADAHFLELDRIRAFTSDRLEVQV SATMQYFLRKEDLPLLHRRFDLQYEDVVMKSAEDALKHNKGHTCRYVLDVTRRSQTALFSETVYHAYQAYVTQVCILMTR WLPTSALKCSAFAIEFLLN |