Gene
| Gene Model ID | pfu_aug1.0_14249.1_54044 |
|---|---|
| Locus | scaffold14249.1 : 6896 ... 27431 : + |
| To GenomeBrowser | scaffold14249.1:6896..27431 |
| Genes list of scaffold | scaffold14249.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_14249.1_54044.t1 | 2 | 1 | Band_7 | 6 | 81 | 6.4e-09 | 35.9 | 9.0e-08 | 0.00067 | 19.6 |
| pfu_aug1.0_14249.1_54044.t1 | 2 | 2 | Band_7 | 111 | 188 | 6.4e-09 | 35.9 | 2.9e-06 | 0.021 | 14.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_14249.1_54044.t1 | gi|260786369|ref|XP_002588230.1| | hypothetical protein BRAFLDRAFT_124696 [Branchiostoma floridae] | 2.0e-28 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 5 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_14249.1_54044.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14249.1_54044.t1 atggctttatcagacagaagagcacaggtacaagtatcagcaacaatgcagtactttttaagaaaagaagacctgccatt gctccatagacggtttgacctacagtatgaggacgtagtgatgaaaagtgctgaagatgccttgaagggggaaatcacca agtttacaacaagagaactttacgagaaaagagcagagacggaatccagtatatataaggcggtacgacaaaggctgggg ggtgtatgctgtgccatcaactgtaattcttttcaatatgttggagtcttaagcccggtacacacgtatggctttatcag acagaagagcacgggtacagtcagtttggacgatgtctattctacaggaaagcatttcattggtcctgactttgagttta aagttttccaagccgacgctcacttcttagaactggatagaattagggcattcacatctgatcgcttagaggtacaagta tcggcaacaatgcagtactttttaagaaaagaagacctgccattgctccatagacggttcgacctacagtatgaggacgt agtgatgaaaagtgctgaagatgccctgaagcataataaaggacatacctgtcggtatgtccttgatgtaacacgccgct cgcagacggcgttattttcagagacggtataccatgcctaccaagcctatgtaacccaggtatgcatattaatgacccgg tggttgccaacgtcggccttaaagtgttctgcttttgctatcgaatttctattgaattga |
|
Protein
| Protein ID | pfu_aug1.0_14249.1_54044.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14249.1_54044.t1 MALSDRRAQVQVSATMQYFLRKEDLPLLHRRFDLQYEDVVMKSAEDALKGEITKFTTRELYEKRAETESSIYKAVRQRLG GVCCAINCNSFQYVGVLSPVHTYGFIRQKSTGTVSLDDVYSTGKHFIGPDFEFKVFQADAHFLELDRIRAFTSDRLEVQV SATMQYFLRKEDLPLLHRRFDLQYEDVVMKSAEDALKHNKGHTCRYVLDVTRRSQTALFSETVYHAYQAYVTQVCILMTR WLPTSALKCSAFAIEFLLN |
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