Gene
Gene Model ID | pfu_aug1.0_1432.1_58495 |
---|---|
Locus | scaffold1432.1 : 3066 ... 15864 : + |
To GenomeBrowser | scaffold1432.1:3066..15864 |
Genes list of scaffold | scaffold1432.1 |
Synonym | pfu_aug2.0_52.1_06820 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1432.1_58495.t1 | 2 | 1 | RRM_1 | 75 | 94 | 3.8e-13 | 48.8 | 0.35 | 1700.0 | -1.3 |
pfu_aug1.0_1432.1_58495.t1 | 2 | 2 | RRM_1 | 347 | 416 | 3.8e-13 | 48.8 | 6.3e-16 | 3.1e-12 | 45.9 |
pfu_aug1.0_1432.1_58495.t1 | 1 | 1 | RRM_6 | 347 | 414 | 3.6e-10 | 39.6 | 2.1e-13 | 1.1e-09 | 38.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_1432.1_58495.t1 | gi|194228182|ref|XP_001492854.2| | PREDICTED: RNA-binding protein 41 isoform X1 [Equus caballus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
maleGonad | 1 |
Transcript
Transcript ID | pfu_aug1.0_1432.1_58495.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1432.1_58495.t1 atggatgtgtcgttagtaccaaagagtagaaaatcggccctcctcccaccgtccgaagaaatccaaacagaggcacaaaa gcagttgaaaacactggtgcagaaacaactcaacaaagatgttaccattcaacaacaactttctcagaagaggagctttg cgagttcgagtttccatgaccccgcagtgagcaaactttcgggattagtaaaactcgaggattttgccagttgggaagat gctgattcttacattacggaattaaaaggatatggattaacattggaggaaatagagctgaaactcaccaatgaatatcc taaactggactcaggaaagaaaccaagatatggaattgatccatctttacaacagagtaagctagaagagattgagagga aaatagaagagaagaaaaacaagttgaaaagccaagatgtgttttacggtcagaaaatactgactcgtcacgaaatggag gtcgaaaagtcactactgagagaatcaagtgtggagggtaagaagttgtcatctatgttaacagcagtgaagcattgtgg gaaggctgtgcatccagatgatccaatgaatcatttggaggaaattctagaaacggtaaccaatagcaacaaacctacaa agaaggcagacaacaagaagaaacacaagaacaaaggaatctcacaaattgaagtacaaaatagagaatttacccagtcc agagatcataggatagaaaatgtagagagtgtgaatgaaaaccgtgaagagtgttcaaatgaagtgctaagggaaaattc aagacgtttgactgagacaaatttagaaactcaattgaccaatgaagcggatacttgtaattctcgccttaattgttcag aaagggaaattcagggaaaaaagacaggtgctgtagaactgcagtctaaaatagcatacattccagaatgtgatattgtg gctaacagactgagtgtaggtgaaattaaagctttacccagatttgaaaattactctgctgggacaccaaataagacact gtacctaaagaatctgtctcccaaagcgacaccagaagacttagtctccgtgttcggccggttccaagagtcgggtcagc agcaaattgtgtatcgtcttatgtctggtagaatgaaggggcaaggttttgtagaatttaaagatgaagagacagcagct aaggctcttatacttgctaatggatacatgctgaaagggaagccaatggttattcaatatggaaggaaaaagttgtga |
Protein
Protein ID | pfu_aug1.0_1432.1_58495.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1432.1_58495.t1 MDVSLVPKSRKSALLPPSEEIQTEAQKQLKTLVQKQLNKDVTIQQQLSQKRSFASSSFHDPAVSKLSGLVKLEDFASWED ADSYITELKGYGLTLEEIELKLTNEYPKLDSGKKPRYGIDPSLQQSKLEEIERKIEEKKNKLKSQDVFYGQKILTRHEME VEKSLLRESSVEGKKLSSMLTAVKHCGKAVHPDDPMNHLEEILETVTNSNKPTKKADNKKKHKNKGISQIEVQNREFTQS RDHRIENVESVNENREECSNEVLRENSRRLTETNLETQLTNEADTCNSRLNCSEREIQGKKTGAVELQSKIAYIPECDIV ANRLSVGEIKALPRFENYSAGTPNKTLYLKNLSPKATPEDLVSVFGRFQESGQQQIVYRLMSGRMKGQGFVEFKDEETAA KALILANGYMLKGKPMVIQYGRKKL |