Gene
| Gene Model ID | pfu_aug1.0_1432.1_58498 |
|---|---|
| Locus | scaffold1432.1 : 55288 ... 58795 : - |
| To GenomeBrowser | scaffold1432.1:55288..58795 |
| Genes list of scaffold | scaffold1432.1 |
| Synonym | pfu_aug2.0_560.1_00892 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | Pfu-bindin |
| Description | Best hit to accession EF219425-219429 (Crassostrea gigas bindin precursor) 91 bits, 7e-17. Only F-lectin repeat region. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1432.1_58498.t1 | 1 | 1 | F5_F8_type_C | 37 | 154 | 2.6e-08 | 33.7 | 4.8e-12 | 3.6e-08 | 33.3 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantleEdge | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1432.1_58498.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1432.1_58498.t1 atggcgtgttctgttttgatcttcgggctactgatatccgtaggtgggattcacctcgttcaaagtaacacaggattggt caacttagcatatggaaagcgcgtaactttaagctcaaactacaatcccccgtatcctggcgcaaacgcagtgaatggtg ttctctcagatcttgcacacactggtgctgaagataatccgtggctacggatcgatttaggagcagagtgttcgattcac gaaatcgaaatttttgcgagatcagactgttgtggttctcaactacacgacctagaagtatcagtcggcagatctcggag tcagatgtccgtatgtggtcatttcacgggacctgcgccttcaaacggtgcacgggttgcaatatggtgtccctactcca cggttggtcgctatgttgaagtgaaaattgtcaaggatagaaacaacgtactaacacccgctgaggtccttgtgtgggga aacccaaactgcatttaa |
|
Protein
| Protein ID | pfu_aug1.0_1432.1_58498.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1432.1_58498.t1 MACSVLIFGLLISVGGIHLVQSNTGLVNLAYGKRVTLSSNYNPPYPGANAVNGVLSDLAHTGAEDNPWLRIDLGAECSIH EIEIFARSDCCGSQLHDLEVSVGRSRSQMSVCGHFTGPAPSNGARVAIWCPYSTVGRYVEVKIVKDRNNVLTPAEVLVWG NPNCI |
|