Gene
| Gene Model ID | pfu_aug1.0_144.1_22029 |
|---|---|
| Locus | scaffold144.1 : 51626 ... 72344 : + |
| To GenomeBrowser | scaffold144.1:51626..72344 |
| Genes list of scaffold | scaffold144.1 |
| Synonym | pfu_aug2.0_131.1_03685 |
Manual annotation
| Study field | Environmental Response |
|---|---|
| Gene name | calcitonin-like receptor |
| Description | 7tm_2 domain |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_144.1_22029.t1 | 2 | 1 | 7tm_2 | 115 | 237 | 5.5e-23 | 81.3 | 1.6e-22 | 2.4e-18 | 66.1 |
| pfu_aug1.0_144.1_22029.t1 | 2 | 2 | 7tm_2 | 238 | 287 | 5.5e-23 | 81.3 | 3.8e-08 | 0.00056 | 19.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_144.1_22029.t1 | gi|60729677|pir||JC8022 | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_144.1_22029.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_144.1_22029.t1 atgacatggaacagtaaacgcggcaccaaacatcaaacacaactgaccacacttaaaccaacaacactcatgggcaatcg ttgccgatttaggacggtcatctgcgatgttagtagcagatggtgtggttatccgaaatacgtgcgcaaaatccttccaa ttttctggtcaccaaaggttctcattttcacggatgacggtcccggatgcagtatcgacaaaaagaccacggattgcgtc caatttattgtaatccgtgtgtcactacgggcaagcagtaaaaacttgtctngtctaatggaagttggattggtcgtaca gattacacaccgtgttcaaactataatattgttgagaaaacagcacaggatccggcttcatgtcaatctgttcatagctc tacttctgaaggagctgatgaccgttctctgggacatgttagtaacgtatgataaactgaagaatgaagaagtattcgac acagtattgatgaaaaatgaggttggttgtaaaattctgatgtttctgaaactctacttcaactgctgttgttttacctg gatgttttgtgaggggttctatctacacagactgatgagtaacgccttctctcctcccagatctcttattcccgtctatc ttgctggttggttacttccccttactacatctaccctctacagcatattacggggaatctacgcaaacgacagacgagct gtaaaggcaacattcgtattgatacctttatttggagtccagttatttgtcacagcgtatagagttccaacgacagtacc aggaggcctagaatatgaaagattttcgatgatcgtcaacaatttacagggctttctcgtcgcattggtgttctgctttc ttaatggagaagtattatcacaaataagacgatcagtccgtcggcgaattcgagacagatttggaacttcaagaaggatg aataacacactaaaccaaaccctatcaatgagatccgaatatgacggacaacgattttcggaaacacatagctcattatt gcagacgaataaccacaaaaaggattgtataccactagatgaaaaatataacgaaaagtgtaaaagttgtgaccttaatt atcaaagctcaagtgacgaatctcgacatccatttgtttga |
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Protein
| Protein ID | pfu_aug1.0_144.1_22029.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_144.1_22029.t1 MTWNSKRGTKHQTQLTTLKPTTLMGNRCRFRTVICDVSSRWCGYPKYVRKILPIFWSPKVLIFTDDGPGCSIDKKTTDCV QFIVIRVSLRASSKNLSXLMEVGLVVQITHRVQTIILLRKQHRIRLHVNLFIALLLKELMTVLWDMLVTYDKLKNEEVFD TVLMKNEVGCKILMFLKLYFNCCCFTWMFCEGFYLHRLMSNAFSPPRSLIPVYLAGWLLPLTTSTLYSILRGIYANDRRA VKATFVLIPLFGVQLFVTAYRVPTTVPGGLEYERFSMIVNNLQGFLVALVFCFLNGEVLSQIRRSVRRRIRDRFGTSRRM NNTLNQTLSMRSEYDGQRFSETHSSLLQTNNHKKDCIPLDEKYNEKCKSCDLNYQSSSDESRHPFV |
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