Gene
| Gene Model ID | pfu_aug1.0_14401.1_39608 |
|---|---|
| Locus | scaffold14401.1 : 40 ... 11785 : - |
| To GenomeBrowser | scaffold14401.1:40..11785 |
| Genes list of scaffold | scaffold14401.1 |
| Synonym | pfu_aug2.0_2.1_06692 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_14401.1_39608.t1 | 1 | 1 | zf-C4 | 67 | 135 | 1.4e-29 | 102.1 | 5.6e-33 | 2.8e-29 | 101.1 |
| pfu_aug1.0_14401.1_39608.t1 | 2 | 1 | Hormone_recep | 210 | 264 | 3.6e-15 | 55.6 | 9.7e-13 | 4.8e-09 | 35.6 |
| pfu_aug1.0_14401.1_39608.t1 | 2 | 2 | Hormone_recep | 312 | 362 | 3.6e-15 | 55.6 | 2.6e-07 | 0.0013 | 17.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_14401.1_39608.t1 | gi|260790073|ref|XP_002590068.1| | hypothetical protein BRAFLDRAFT_123436 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 20 |
| egg-4cell | 2 |
| 8-16cell | 3 |
| egg-Dshape | 5 |
| trochophore | 4 |
| >Adult tissues | |
| Dshape | 2 |
| adductorMuscle | 2 |
| maleGonad | 7 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 3 |
Transcript
| Transcript ID | pfu_aug1.0_14401.1_39608.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14401.1_39608.t1 atgttaaatatagatcatatggactcggttaatggaggcgatggtgagaccgtgctcacgtcaccggatgtctcacagtc aggttctaatgtagtatcgaccacaccgattattcagattgaaactgtaggtgacagtagagataaggtcggagagggaa gtagtggtatgtaccctccgccagatgccattacacagccttgtatgatatgtggcgataagggatctggattccattac tctgtgttttcgtgtgagggatgtaagggatttttcaaaaggagtgtgcagaaaaacttgatatattcttgtaaaaacga cggggaatgctcaattaacaagttcactcgtaataactgtcagtactgtagatttgttaagtgttcacagatgggaatga aaagggaagctgtacgagaggatcgttcacccggaggcaagcatcgtcataaacgaccaaagctagacgaagtgacggca gtggtaaactcagagggcaatgttatatttcaactccctgcgacacaggattcaaacatatttgaggacaagatcgtgga gggtctcattgatgcacagccggatctcatcccaagggttgagggaaatttaggtttacagaatttgggaattaatcagt taatgcaatatggatacgcagaactcaagtacattattgactgggccaaaagagtaccaggtttccccgagatatgtata gaggatcaaatggccctactcaaatcctccttcatggaactaaatgtgctcagactggcattcagagcagaattgcactg tagtcatgccaagacacgacatcgcaacatgggacatatttttttgtgtcgcctgcgaagcatagcgacacttagggatc actttgtccgttgtccgtctgtccgtccgtctgtctatgctgctgggttaaaagaaaagcataaagtgacgttattacag accaaaattctgaactcgctcggaaaatatcaacgttatcgcttccctgagaaccctaaacgttatggacagaccttgct acgtttaccatcattacggacagtcagtgccaaagctgcggagagattcttgtcgttaactctagatggcacagtgcaaa taaatgatctcgtcttagaaatgataaattaa |
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Protein
| Protein ID | pfu_aug1.0_14401.1_39608.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14401.1_39608.t1 MLNIDHMDSVNGGDGETVLTSPDVSQSGSNVVSTTPIIQIETVGDSRDKVGEGSSGMYPPPDAITQPCMICGDKGSGFHY SVFSCEGCKGFFKRSVQKNLIYSCKNDGECSINKFTRNNCQYCRFVKCSQMGMKREAVREDRSPGGKHRHKRPKLDEVTA VVNSEGNVIFQLPATQDSNIFEDKIVEGLIDAQPDLIPRVEGNLGLQNLGINQLMQYGYAELKYIIDWAKRVPGFPEICI EDQMALLKSSFMELNVLRLAFRAELHCSHAKTRHRNMGHIFLCRLRSIATLRDHFVRCPSVRPSVYAAGLKEKHKVTLLQ TKILNSLGKYQRYRFPENPKRYGQTLLRLPSLRTVSAKAAERFLSLTLDGTVQINDLVLEMIN |
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