Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_14471.1_03500
Locus scaffold14471.1 : 1800 ... 14785 : -
To GenomeBrowser scaffold14471.1:1800..14785
Genes list of scaffold scaffold14471.1
Synonym NA

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_14471.1_03500.t1 1 1 LTV 32 66 1.7e-06 27.8 1.2e-10 1.9e-06 27.7

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_14471.1_03500.t1 gi|158293215|ref|XP_314541.3| AGAP010572-PA [Anopheles gambiae str. PEST] 6.0e-11

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues
maleGonad 1

Transcript
Transcript IDpfu_aug1.0_14471.1_03500.t1
Definition-
>pfu_aug1.0_14471.1_03500.t1
atgggctcggatgtcgagtatggatcggacgagtgcgagttctctgacgaggaatacgacagatttggtgatgatggaat
gtttggaaacgaggaaacaaagtcacgcttcacggaatactccatgtcttcttctgtaatacggagaaatgacggactct
cactgctcgatgacaggtttgagaaggttgtagaggagaagtaa

Protein
Protein IDpfu_aug1.0_14471.1_03500.t1
Definition-
>pfu_aug1.0_14471.1_03500.t1
MGSDVEYGSDECEFSDEEYDRFGDDGMFGNEETKSRFTEYSMSSSVIRRNDGLSLLDDRFEKVVEEK

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