Gene
| Gene Model ID | pfu_aug1.0_1454.1_44036 |
|---|---|
| Locus | scaffold1454.1 : 18146 ... 33573 : + |
| To GenomeBrowser | scaffold1454.1:18146..33573 |
| Genes list of scaffold | scaffold1454.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1454.1_44036.t1 | 2 | 1 | Myb_DNA-binding | 4 | 42 | 1.3e-18 | 66.8 | 3.6e-13 | 1.3e-09 | 37.8 |
| pfu_aug1.0_1454.1_44036.t1 | 2 | 1 | Myb_DNA-bind_6 | 4 | 59 | 1.2e-17 | 63.7 | 1.8e-15 | 6.5e-12 | 45.3 |
| pfu_aug1.0_1454.1_44036.t1 | 2 | 2 | Myb_DNA-binding | 49 | 90 | 1.3e-18 | 66.8 | 8.4e-11 | 3.1e-07 | 30.3 |
| pfu_aug1.0_1454.1_44036.t1 | 2 | 2 | Myb_DNA-bind_6 | 51 | 92 | 1.2e-17 | 63.7 | 4.2e-10 | 1.5e-06 | 28.1 |
| pfu_aug1.0_1454.1_44036.t1 | 1 | 1 | Myb_Cef | 122 | 257 | 3.5e-25 | 88.5 | 1.4e-28 | 5.3e-25 | 87.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1454.1_44036.t1 | gi|56118452|ref|NP_001008202.1| | cell division cycle 5-like protein [Xenopus (Silurana) tropicalis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 2 |
Transcript
| Transcript ID | pfu_aug1.0_1454.1_44036.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1454.1_44036.t1 atgatccaagatgaaatccttaaggcagctgttatgaaatatgggaaaaatcagtgggctcgtattgcttcactgttaca cagaaagtctgcaaaacagtgcaaggcacgctggtttgaatggctggatccgagtattaagaaaacagaatggagccgag aggaagaggagaaattattacacatggccaagttgatgcctacacagtggagaaccatagctcccatcataggtagaacc gccgcacagtgtctggaacactacgaatatctacttttccaagaaccagtaaagaagcgtagcaagttagtattaccagc tccacaaatatctgatcaagaactggaagaggtcgtaaaagtaggtcaggcgagagccaaggagatgaggcttcgttccc agtctgtacagagagaattacctcgtccgtctgatgtaaacgacagtatactgaggatagtcgggcctggtgaccctcca cttagtgatctacaaaaggctgaggaacttataaagaaggagatgttgattatggagcactatgatgctgtgtactcccc cacccccgggcagctaggggtggtgccagggaagaaaggacagaaatctgtggccacacaggctcagcatctgtcatata tacaacaacatccatataataactacactgaggaagaactagagcaggctcgaggtcttctacgtcgtgagatggatgta gttaagcagggtatgagccatggggatctctccctagaagcttactctacagtgtgggaggagtgttactcccaagtcct gtatctcccatcacagaacagatacaccagggctaacctggccagcaagaaagacaggatagaatctctcgagaaacgac tagaggtaaatatatatgtgtacatgggtgtgtggagaaacgactag |
|
Protein
| Protein ID | pfu_aug1.0_1454.1_44036.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1454.1_44036.t1 MIQDEILKAAVMKYGKNQWARIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEEEKLLHMAKLMPTQWRTIAPIIGRT AAQCLEHYEYLLFQEPVKKRSKLVLPAPQISDQELEEVVKVGQARAKEMRLRSQSVQRELPRPSDVNDSILRIVGPGDPP LSDLQKAEELIKKEMLIMEHYDAVYSPTPGQLGVVPGKKGQKSVATQAQHLSYIQQHPYNNYTEEELEQARGLLRREMDV VKQGMSHGDLSLEAYSTVWEECYSQVLYLPSQNRYTRANLASKKDRIESLEKRLEVNIYVYMGVWRND |
|