Gene
| Gene Model ID | pfu_aug1.0_1459.1_22601 |
|---|---|
| Locus | scaffold1459.1 : 36369 ... 47975 : - |
| To GenomeBrowser | scaffold1459.1:36369..47975 |
| Genes list of scaffold | scaffold1459.1 |
| Synonym | pfu_aug2.0_21.1_03445 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1459.1_22601.t1 | 1 | 1 | Neur_chan_LBD | 18 | 140 | 5.9e-16 | 58.2 | 1.7e-19 | 8.4e-16 | 57.7 |
| pfu_aug1.0_1459.1_22601.t1 | 2 | 1 | Neur_chan_memb | 149 | 245 | 6.1e-15 | 55.7 | 1.2e-18 | 6.1e-15 | 55.7 |
| pfu_aug1.0_1459.1_22601.t1 | 2 | 2 | Neur_chan_memb | 242 | 264 | 6.1e-15 | 55.7 | 0.1 | 510.0 | 0.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1459.1_22601.t1 | gi|31745832|gb|AAP57217.1| | nicotinic acetylcholine receptor alpha 7c subunit, partial [Takifugu rubripes] | 4.0e-26 |
Transcript
| Transcript ID | pfu_aug1.0_1459.1_22601.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1459.1_22601.t1 atgccccgacggtttaactgcgtttctaacagagagagagttgtctgccctcaactagacgataaaatttggaaaccttt cctggctctagcaaacccaaaaggggatggaattttatttgcagatagccaattcaaagtgcgtgtattcgacaatggta caattgtttggttgaccgcgggaacattgacagtgacgtgtaaacctgacgtcagaaattatccttttgacgtacatagc tgtagtgtcaaaatattcccaatggacgaaatcatccgtgaaatacgtttatattccgatcttaaactccatgtatttga caacttcggacaatgggacatgattcacgagggcgtgtacgataccatgttggatatattttctctaacagtatttcact tcaaaatcagacggcgaccgcagttttctgtccttggaatctgcttacctattcttttcattggaatcatgaacgcaatc gtattcattatacccccaacttccggtgagaggatatcgtttgctatcacggtacttttggcgcttattgtgtttatgtc cattgttcattcatccatgccaaagaactcggaccctgtacctattttgtcctatgtattgatgactatgatgatagaga gtggactagtggtatttcttaccgttatgagtctgcgattccatttgaaacaggagacatcggaaggagcgtttcctttt aaagtaaaggctgtactctttgacagattttgtttctggataacattgatatcgttcattttcaccatggttgcctttat cttaggactttacattcacaagttatctcatgaataa |
|
Protein
| Protein ID | pfu_aug1.0_1459.1_22601.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1459.1_22601.t1 MPRRFNCVSNRERVVCPQLDDKIWKPFLALANPKGDGILFADSQFKVRVFDNGTIVWLTAGTLTVTCKPDVRNYPFDVHS CSVKIFPMDEIIREIRLYSDLKLHVFDNFGQWDMIHEGVYDTMLDIFSLTVFHFKIRRRPQFSVLGICLPILFIGIMNAI VFIIPPTSGERISFAITVLLALIVFMSIVHSSMPKNSDPVPILSYVLMTMMIESGLVVFLTVMSLRFHLKQETSEGAFPF KVKAVLFDRFCFWITLISFIFTMVAFILGLYIHKLSHE |
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