Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_14675.1_18144
Locus scaffold14675.1 : 435 ... 5825 : -
To GenomeBrowser scaffold14675.1:435..5825
Genes list of scaffold scaffold14675.1
Synonym pfu_aug2.0_432.1_07515

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_14675.1_18144.t1 2 1 Aldo_ket_red 5 43 3.7e-12 45.6 2.9e-08 0.00043 19.1
pfu_aug1.0_14675.1_18144.t1 2 2 Aldo_ket_red 44 92 3.7e-12 45.6 3.0e-10 4.4e-06 25.7

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_14675.1_18144.t1 gi|340370304|ref|XP_003383686.1| 1.0e-13

Transcript
Transcript IDpfu_aug1.0_14675.1_18144.t1
Definition-
>pfu_aug1.0_14675.1_18144.t1
atggagaacaatcagaagctcgatcttggatacattgacctgtatctgatacattccccatctgcaggaaagaatgtgga
gacatataaaacactgttggactttaaaagtaaagggttaatcagatataacaaaaccccagcccaggttatgatccgtt
ggagcgtccagattggctttatcaccataccaaaatcagccaacttagatcggatcattgagaatgcagatgtttttgat
tggtcgattgatgaagaggacatggccacactagtgagtacaattatagttgttttgtatgtttag

Protein
Protein IDpfu_aug1.0_14675.1_18144.t1
Definition-
>pfu_aug1.0_14675.1_18144.t1
MENNQKLDLGYIDLYLIHSPSAGKNVETYKTLLDFKSKGLIRYNKTPAQVMIRWSVQIGFITIPKSANLDRIIENADVFD
WSIDEEDMATLVSTIIVVLYV

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