Gene
| Gene Model ID | pfu_aug1.0_146933.1_35560 |
|---|---|
| Locus | scaffold146933.1 : 1 ... 974 : + |
| To GenomeBrowser | scaffold146933.1:1..974 |
| Genes list of scaffold | scaffold146933.1 |
| Synonym | NA |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | titin |
| Description | Titin partial sequence. BLASTP hit to GL450640(Harpegnathos saltator). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_146933.1_35560.t1 | 2 | 1 | I-set | 5 | 59 | 3.1e-30 | 103.8 | 4.0e-12 | 6.6e-09 | 35.5 |
| pfu_aug1.0_146933.1_35560.t1 | 2 | 1 | Ig_2 | 5 | 54 | 2.8e-10 | 40.1 | 0.00031 | 0.52 | 10.4 |
| pfu_aug1.0_146933.1_35560.t1 | 2 | 1 | V-set | 11 | 47 | 2.3e-07 | 30.7 | 2.3e-06 | 0.0038 | 17.1 |
| pfu_aug1.0_146933.1_35560.t1 | 2 | 1 | ig | 17 | 40 | 1.0e-05 | 25.5 | 0.012 | 20.0 | 5.3 |
| pfu_aug1.0_146933.1_35560.t1 | 2 | 2 | I-set | 75 | 155 | 3.1e-30 | 103.8 | 7.5e-22 | 1.2e-18 | 66.6 |
| pfu_aug1.0_146933.1_35560.t1 | 2 | 2 | V-set | 75 | 143 | 2.3e-07 | 30.7 | 0.00019 | 0.31 | 10.9 |
| pfu_aug1.0_146933.1_35560.t1 | 2 | 2 | Ig_2 | 89 | 154 | 2.8e-10 | 40.1 | 1.4e-09 | 2.3e-06 | 27.6 |
| pfu_aug1.0_146933.1_35560.t1 | 2 | 2 | ig | 89 | 136 | 1.0e-05 | 25.5 | 1.4e-06 | 0.0023 | 18.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_146933.1_35560.t1 | gi|115681464|ref|XP_794723.2| | 2.0e-32 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_146933.1_35560.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_146933.1_35560.t1 tcttacacaggagtaaagacagtcgcaaaattgatgaaagtaagaaatatcaaatgatgcaagatgacatgactgtttcc atgacgatacgtgaggtcacccaaaaagatgctggaagttacagtgtggaggcatcaaatgaccttggatctgtgtcaac atcaggtcaactagaaatacaaatgaaaccagaactggactttgacaacaaattccgtgaccttattgtactacagagtg gtcagtctctgagggttccagtgatcgtgtcaggactgcccaaaccagacgtcacatggaggaaagacgatactccactc aaatcctccggtaaactaagcatagaaactacagagagaggaaccactatacacgtcaagaaagtggccagaagtgatga tgggttataccacctgacagctcagaatgaggctggagaggccactgctaacttcgatgtagaagtcatagacgtaccat caccaccagagggtcccgtggaatattcagaaattaatcgggacagtgttacgttgtcatggaaaccacccgttgatgat ggtggatccaaacttttatcgtacattattgagaaacgtgaag |
|
Protein
| Protein ID | pfu_aug1.0_146933.1_35560.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_146933.1_35560.t1 LHRSKDSRKIDESKKYQMMQDDMTVSMTIREVTQKDAGSYSVEASNDLGSVSTSGQLEIQMKPELDFDNKFRDLIVLQSG QSLRVPVIVSGLPKPDVTWRKDDTPLKSSGKLSIETTERGTTIHVKKVARSDDGLYHLTAQNEAGEATANFDVEVIDVPS PPEGPVEYSEINRDSVTLSWKPPVDDGGSKLLSYIIEKRE |
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