Gene
Gene Model ID | pfu_aug1.0_14708.1_39633 |
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Locus | scaffold14708.1 : 4156 ... 18994 : + |
To GenomeBrowser | scaffold14708.1:4156..18994 |
Genes list of scaffold | scaffold14708.1 |
Synonym | pfu_aug2.0_16.1_20052 |
Manual annotation
Study field | Reproduction |
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Gene name | Dopamine D1-like receptor |
Description | Reciprocal BLASTP best hit to NCBI Accession CAL69636.1, novel insect-like dopamine D1-like G-protein coupled receptor (Branchiostoma floridae). |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_14708.1_39633.t1 | 2 | 1 | 7TM_GPCR_Srsx | 201 | 377 | 1.5e-10 | 40.6 | 6.0e-11 | 4.5e-07 | 29.3 |
pfu_aug1.0_14708.1_39633.t1 | 1 | 1 | 7tm_1 | 206 | 540 | 0.0 | 263.0 | 0.0 | 0.0 | 262.2 |
pfu_aug1.0_14708.1_39633.t1 | 2 | 2 | 7TM_GPCR_Srsx | 474 | 553 | 1.5e-10 | 40.6 | 3.3e-06 | 0.024 | 13.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_14708.1_39633.t1 | gi|242046704|ref|XP_002399655.1| | G-protein coupled receptor, putative [Ixodes scapularis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
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>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_14708.1_39633.t1 |
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Definition | - |
>pfu_aug1.0_14708.1_39633.t1 atgaaaacttacaggaagctagttctcatagtcatctaccaagtttgtgtttttcgtgccaattggtcgacaaatattgc cgctgaggactccgattggctgacatatttttcacttctctacaaccgctgcacaaaatttcacgaaaccttactggaag aagtactcaaggtcctctacctagtttgtgtttttcatgccaatgagtctacagcaatgcgcgttttaacagcggcacct acagtgcattcaccacttgcacttaaaaaagttccccgcgaggggtttgacagtaagtgttnatgcaacacccgccgctt caattcggtagaactgtcacatccgtcgcgactaccaaagcataggntattgttcgatcaccttgacaaaccttcattaa tgtcgaccattcagagaaccaatgtgacacaggatagctttattcagttaatagaaaacgcaacggaagtatctacatat atctggaattattcggaactgcagctcaattcgtccaatgcttcttggtcgaacacgtcagaggaagcaagtgttcattt cacccaccctgctatttctgctctgctcgtatttttcagtgtagtgactattgtaggaaatttactcgtcatcatagcag tgtccaaggaactctatcttcgcaccgtaacaaattatttcattgtctcccttgccgtggctgaccttataataggtgga atcgttatgcctttttctatcagtttagaattgacgaaccaagtttggcttttcggttcagaatggtgcgacctgtggca ctcctttgacgttcttgccagtacggcttcaatccttaatctatgtgtgatatccttggatcgttactgggctattacgg atcccatagcctaccccacaaaaatgtcaacgtgtaaagtgagtctattgatagcatttgtttggttgtgttccgccgga atttcttttcccgccatcgcgtggtggaaagccgtaatgcccaataacttgccacctcatctctgcattttcacggaaga tagtgcctatttaattttttcttcaaccgtatctttttattgcccgacggttataatgatgtttgtgtattggagaatat atcttgctgcgatggcacaaataaaaagtctcaaaacagggtctaagaccttgacctcaaatggaatacatggcgtccga gaggtcatgaccctcagaatccatcgaggaggtggtggagggggagtgtcacgtcaaccttccgacgagtatgcgcagac gtacgaaaaatgtgctaccgacagtgaccatgagattttagtcaataataaacgaattcacactgcggatgcgaataatc atagaccagcgaaattcataacaaaaagactgaggcaattcgcactgagtaagaaaattacgaaactagcacgggaacaa aaagccgcaaagactctcgggattgtggtgggagtattcatcatgtgctgggtacctttcttcgttctcaatatcctcat cggaacatgcaacgattcatgtgtttctaataaaggacttctgtttccgttattcacctggttgggatatatcaattccg ggatgaatccagtgatatatgcgctatcaatgaaggacttccgcagggccttcggaaaaatcgtatttgtctgttgccca agatacaaattttcatatcagcgagcatataaaaagaaaaatggttcatccacttctagctttatggttgccaactgcac atcggcccacgataaacactga |
Protein
Protein ID | pfu_aug1.0_14708.1_39633.t1 |
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Definition | - |
>pfu_aug1.0_14708.1_39633.t1 MKTYRKLVLIVIYQVCVFRANWSTNIAAEDSDWLTYFSLLYNRCTKFHETLLEEVLKVLYLVCVFHANESTAMRVLTAAP TVHSPLALKKVPREGFDSKCXCNTRRFNSVELSHPSRLPKHRXLFDHLDKPSLMSTIQRTNVTQDSFIQLIENATEVSTY IWNYSELQLNSSNASWSNTSEEASVHFTHPAISALLVFFSVVTIVGNLLVIIAVSKELYLRTVTNYFIVSLAVADLIIGG IVMPFSISLELTNQVWLFGSEWCDLWHSFDVLASTASILNLCVISLDRYWAITDPIAYPTKMSTCKVSLLIAFVWLCSAG ISFPAIAWWKAVMPNNLPPHLCIFTEDSAYLIFSSTVSFYCPTVIMMFVYWRIYLAAMAQIKSLKTGSKTLTSNGIHGVR EVMTLRIHRGGGGGGVSRQPSDEYAQTYEKCATDSDHEILVNNKRIHTADANNHRPAKFITKRLRQFALSKKITKLAREQ KAAKTLGIVVGVFIMCWVPFFVLNILIGTCNDSCVSNKGLLFPLFTWLGYINSGMNPVIYALSMKDFRRAFGKIVFVCCP RYKFSYQRAYKKKNGSSTSSFMVANCTSAHDKH |