Gene
| Gene Model ID | pfu_aug1.0_14712.1_18150 |
|---|---|
| Locus | scaffold14712.1 : 836 ... 13182 : + |
| To GenomeBrowser | scaffold14712.1:836..13182 |
| Genes list of scaffold | scaffold14712.1 |
| Synonym | pfu_aug2.0_80.1_00202 |
Manual annotation
| Study field | Environmental Response |
|---|---|
| Gene name | G Protein coupled receptor |
| Description | similar (82%) to CAP17415.1| G Protein coupled receptor [Crassostrea gigas |
| mRNA evidence |
| Study field | Reproduction |
|---|---|
| Gene name | Pifuc-GnRH-R-like A |
| Description | Recprocal BLASTP bets hit to NCBI Accession CAP17415 (Crassostrea gigas) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_14712.1_18150.t1 | 1 | 1 | 7TM_GPCR_Srsx | 72 | 176 | 2.0e-08 | 33.7 | 5.4e-12 | 2.7e-08 | 33.3 |
| pfu_aug1.0_14712.1_18150.t1 | 1 | 1 | 7tm_1 | 78 | 194 | 1.0e-29 | 103.4 | 2.7e-33 | 1.3e-29 | 103.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_14712.1_18150.t1 | gi|169264531|emb|CAP19988.1| | G protein coupled receptor [Crassostrea gigas] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_14712.1_18150.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14712.1_18150.t1 atgaaagaagcaaatactttacattcaacacgataccaaaattccgacggagttacggaatcttttttaccgccaaactt tcatttcgatttgaccactctagattacaatatttcggatgatttcgcaaatgcttcgaagttgttcacaattccaaatg aacttcggttcaacgatgacaacctacttgctgtgatatcttactcatgtatgttcgtggtggctgcatgtggaaacctg actgtgttcatcacgctgttcagaaaccgtcatgtcaagtctcgtgtgaatcagttcattcttcatctgtccattgccga tttgatagtaacatttatcatgctccctttagagattatttggaatataacagtagaatggacagcgggagacgctgctt gtaggactctcatgtttttcagaattcttggactttatttgtcgtccttcatccttgtagctataagccttgaccgctac ttcgccatcgttcacccacttagccttaacgacgccgacaaaagagggaaaattatgttaattcttgcctggacattaag tatcgttgctagtattccacag |
|
Protein
| Protein ID | pfu_aug1.0_14712.1_18150.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14712.1_18150.t1 MKEANTLHSTRYQNSDGVTESFLPPNFHFDLTTLDYNISDDFANASKLFTIPNELRFNDDNLLAVISYSCMFVVAACGNL TVFITLFRNRHVKSRVNQFILHLSIADLIVTFIMLPLEIIWNITVEWTAGDAACRTLMFFRILGLYLSSFILVAISLDRY FAIVHPLSLNDADKRGKIMLILAWTLSIVASIPQ |
|